View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15145_low_10 (Length: 348)
Name: NF15145_low_10
Description: NF15145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15145_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 41 - 271
Target Start/End: Original strand, 37471303 - 37471532
Alignment:
| Q |
41 |
gttcgttatctcatgttgtacattttttctctctttttcataataatgctggccattggtttcgcattggtgttccctgtttttataatacaattccgtt |
140 |
Q |
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| T |
37471303 |
gttcgttatctcatgttgtacatttttttt-tctttttcataataatgctggccattggttttgcattggtgttccctgtttttataatacaattccgtt |
37471401 |
T |
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| Q |
141 |
ctttcatgcaggatatccacttccacggtaaagaactgcgggacgcaccagctcctcttggttatcattagggctttactgtcatgaatataaaattact |
240 |
Q |
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| T |
37471402 |
ctttcatgcaggatatccacttccacggtaaagaactgcgggacgcaccagctcctcttggttatcattagggctttactgtcatgaatataaaattact |
37471501 |
T |
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| Q |
241 |
caattagtttgcattacgaaacctataagca |
271 |
Q |
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| T |
37471502 |
catttagtttgcattacgaaacctataagca |
37471532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 261 - 348
Target Start/End: Original strand, 37471561 - 37471648
Alignment:
| Q |
261 |
acctataagcaccaatattttgattatacagaattcttatgctttgatcacacgtttggatggcattatactacatataccctttgta |
348 |
Q |
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| T |
37471561 |
acctataagcaccaatattttgattatacagaattcttatgctttgatcatacgtttggatggcattatactacatataccgtttgta |
37471648 |
T |
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