View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15145_low_12 (Length: 289)
Name: NF15145_low_12
Description: NF15145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15145_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 4378223 - 4378460
Alignment:
| Q |
16 |
caaaatcacggtaacatattcaaatttaaatggttattctgtccaacggtagtctctttctttctaaagaggatcaaacatcattgtcacgatgaggaca |
115 |
Q |
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| T |
4378223 |
caaaatcacagtaacctattcaaatttaaatggttattctgtccaatagtagtctctttctttctaaagagaatcaaacatcattgtcacgatgagggca |
4378322 |
T |
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| Q |
116 |
aacacagaagagcaaatatcatattttcacattgcttaattccacattcgtatagtaatagcttcttaaaccacaggtccacttataattttgcaaaatg |
215 |
Q |
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| T |
4378323 |
aacacagaagagcaaatatcatattttcacattgcttaattccaca-tcgtatagtaatagcttcttaaaccacaagtccactaataattttgcaaaatg |
4378421 |
T |
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| Q |
216 |
taaaatttcttcttagcttgtggttctcctttaactaag |
254 |
Q |
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| T |
4378422 |
taaaatttcttcttagcttgtggttctcctttaactaag |
4378460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 4374642 - 4374739
Alignment:
| Q |
125 |
gagcaaatatcatattttcacattgcttaattccacattcgtatagtaatagcttcttaaaccacaggtccacttataattttgcaaaatgtaaaattt |
223 |
Q |
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||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| |
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| T |
4374642 |
gagcaaataccatactttcacattgcttaattccacactcgtatagtaatagcttctt-aaccacaagtccactaataattttgcaaaatgtaaaattt |
4374739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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