View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15145_low_15 (Length: 255)
Name: NF15145_low_15
Description: NF15145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15145_low_15 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 18221491 - 18221252
Alignment:
| Q |
16 |
caaaggggagcaaaaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaacgatcaaagctttggaaagccagaggggaagaaaatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18221491 |
caaaggggagcaaaaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaacgatcaaagctttggaaagccagaggggaagaaaatc |
18221392 |
T |
|
| Q |
116 |
cctacacttgacgagaaatacgtgatgggaatcgaatttgcaatcaaaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18221391 |
cctacacttgacgagaaatacgtgatgggaatcgaatttgcaatcaaaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcat |
18221292 |
T |
|
| Q |
216 |
ggagcttctgggcctctcctcctaagagcccagttatcaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18221291 |
ggagcttctgggcctctcctcctaagagcccagttatcaa |
18221252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 43013146 - 43013060
Alignment:
| Q |
16 |
caaaggggagcaaaaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaacgatcaaagctttggaaagccaga |
102 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
43013146 |
caaatgggagcaggaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaaagatcaatgctttggaaagccaga |
43013060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 43013060 - 43012967
Alignment:
| Q |
162 |
aaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcatggagcttctgggcctctcctcctaagagcccagttatcaa |
255 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| || |||| ||||||||||| ||||||||||||||| |
|
|
| T |
43013060 |
aaacactctgtagaagcatctcagctaacgaatttgctgagaaaggaaactcatggagtttttgggtctctcctcctatgagcccagttatcaa |
43012967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University