View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15145_low_16 (Length: 251)
Name: NF15145_low_16
Description: NF15145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15145_low_16 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 6370219 - 6370107
Alignment:
| Q |
139 |
gtctaacaggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatgaaactgaagcaaagacct |
238 |
Q |
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| T |
6370219 |
gtctaacaggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatgaaactgaagcaaagacct |
6370120 |
T |
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| Q |
239 |
atgctgctagaac |
251 |
Q |
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| T |
6370119 |
atgctgctagaac |
6370107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 6370371 - 6370312
Alignment:
| Q |
1 |
ataaccaaagaacacttggagccaaacatgaatggggtcacagtaaaagaggtaatgaag |
60 |
Q |
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| T |
6370371 |
ataaccaaagaacacttggagccaaacatgaatggggtcacagtaaaagaggtaatgaag |
6370312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 6352413 - 6352314
Alignment:
| Q |
144 |
acaggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatgaaactgaagcaaagacctatgct |
243 |
Q |
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| T |
6352413 |
acaggctatccaagacaatagattgtacatacttgatcaccacgacccactctttccatatttgaggaaaataaatgcaaccgagacaaaggcctatgct |
6352314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 7459248 - 7459141
Alignment:
| Q |
144 |
acaggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatgaaactgaagcaaagacctatgct |
243 |
Q |
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| T |
7459248 |
acaggctatccaaaacaataaattgtacatacttgatcaccacgatctactaattccatatttgaggagaataaatgcaactgagacaaagtcctatgca |
7459149 |
T |
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| Q |
244 |
gctagaac |
251 |
Q |
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||||||| |
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| T |
7459148 |
actagaac |
7459141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 6424255 - 6424150
Alignment:
| Q |
146 |
aggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatgaaactgaagcaaagacctatgctgc |
245 |
Q |
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|||||||| || |||| | ||||||||| ||||||||| | || | | |||||||||||||||||| |||||| |||||| ||||| |||||||||| |
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| T |
6424255 |
aggctatccaaaacaacaaattgtacatccttgatcactatgacatagtatatccatatttgaggaaaataaatgcaactgagacaaaggcctatgctgc |
6424156 |
T |
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| Q |
246 |
tagaac |
251 |
Q |
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|||||| |
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| T |
6424155 |
tagaac |
6424150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6352675 - 6352618
Alignment:
| Q |
1 |
ataaccaaagaacacttggagccaaacatgaatggggtcacagtaaaagaggtaatga |
58 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||| ||| || ||||||||| |
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| T |
6352675 |
ataaccaaagaaaacttggagccaaacatgggtggggtcaccgtagaacaggtaatga |
6352618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 6391153 - 6391072
Alignment:
| Q |
139 |
gtctaacaggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatg |
220 |
Q |
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| T |
6391153 |
gtctaacagactatcaaggaccttagattatacgtagttgattaccaagatgcaatcttaccatatttgaggaaagtaaatg |
6391072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 6363353 - 6363245
Alignment:
| Q |
143 |
aacaggctatcgaagacaatagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatgaaactgaagcaaagacctatgc |
242 |
Q |
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||||||||||| | | |||| ||||| |||||| ||||||||||| || ||| |||||||||||||||| |||||| ||| || | ||| ||||||| |
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| T |
6363353 |
aacaggctatccagaataataaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaaccgagactaaggcctatgc |
6363254 |
T |
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| Q |
243 |
tgctagaac |
251 |
Q |
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| T |
6363253 |
tactagaac |
6363245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 6410331 - 6410251
Alignment:
| Q |
162 |
tagattgtacatacttgatcaccacgatgcaatctatccatatttgaggaaagtaaatgaaactgaagcaaagacctatgc |
242 |
Q |
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|||||| ||| || ||||| |||| |||||||||| ||||||||||||||| |||||| ||||| |||||| ||||||| |
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| T |
6410331 |
tagattatacgtagttgattaccaagatgcaatcttaccatatttgaggaaaataaatgcaactggcgcaaaggcctatgc |
6410251 |
T |
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