View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15145_low_17 (Length: 250)
Name: NF15145_low_17
Description: NF15145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15145_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 18221039 - 18220790
Alignment:
| Q |
1 |
aaaaagaagaaatggaagaagctgtcaaggtagctccttttgaggtacagagggtgactcgtcaatgcaacaaaaatcaacaaggtgtaagtagtagcag |
100 |
Q |
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| T |
18221039 |
aaaaagaagaaatggaagaagttgtgaaggtagctccttttgaggtacagagggtgactcgtcaatgcaacaaaaatcaacaaggtgtaagtagtagcag |
18220940 |
T |
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| Q |
101 |
cgtggccaaaaagtctaagaaaaatcaccaaggtgtgagtagtggcagtggggataaaaagtctgagaaagcagtgaatgacaccaagaatcaggaactt |
200 |
Q |
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| T |
18220939 |
cgtggccaaaaagtctaagaaaaatcaccaaggtgtgagtagtggcagtggggataaaaagtctgagaaagcagtgaatgacaccaagaagcaggaactt |
18220840 |
T |
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| Q |
201 |
gtggtttatagaagaaacaagccaaaaatatggattgatagatgggctgc |
250 |
Q |
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| T |
18220839 |
gtggtttatagaagaaacaagccaaaaatatggattgatagatgggctgc |
18220790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 43012757 - 43012645
Alignment:
| Q |
10 |
aaatggaagaagctgtcaaggtagctccttttgaggtacagagggtgactcgtcaatgcaacaaaaatcaacaaggtgtaagtagtagcagcgtggccaa |
109 |
Q |
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| T |
43012757 |
aaatggaagaagctgtcaaggtagctcagtttgaggtacagaggacaactcgtcaatgcaacaaaaatcaacaaggtgtgagtagtagcagcggagccaa |
43012658 |
T |
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| Q |
110 |
aaagtctaagaaa |
122 |
Q |
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| T |
43012657 |
aaaatctaagaaa |
43012645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 43012695 - 43012565
Alignment:
| Q |
120 |
aaaaatcaccaaggtgtgagtagtggcagtggggataaaaagtctgagaaagcagtgaatgacaccaagaatcaggaacttgtggtttatagaagaaaca |
219 |
Q |
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|||||||| ||||||||||||||| |||| || | ||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |
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| T |
43012695 |
aaaaatcaacaaggtgtgagtagtagcagcggagccaaaaaatctaagaaagcagtgaatgacaccaagaagcaggaactcgtggtttatagcagaaaca |
43012596 |
T |
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| Q |
220 |
agccaaaaatatggattgatagatgggctgc |
250 |
Q |
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|||||||| || ||||| ||||||||||||| |
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| T |
43012595 |
agccaaaactagggatttatagatgggctgc |
43012565 |
T |
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