View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15145_low_18 (Length: 248)
Name: NF15145_low_18
Description: NF15145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15145_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 39210067 - 39210292
Alignment:
| Q |
1 |
cggtcatttctagccagcaatttgtagcgccaatcataaagagtgactcgaataaaacagtggtgcataaccaacatgcacattggagccactaataata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39210067 |
cggtcatttctagccagcaatttgtagcgccaatcataaagagtgactcgaataaaacagtggtgcataaccaacatgcacattggagccactaataata |
39210166 |
T |
|
| Q |
101 |
aaacaaacaataatatatgcttggaaaatcattcaaaccagggaaaaatacccagacctgaacccaaaccaaacctaacggacccaaaagggttgaaatg |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39210167 |
aaacaaacaataatatctgcttggaaaatcattcaaaccagggaaaaacacccagacctgaacccaaaccaaacctaacagacccaaaagggttgaaatg |
39210266 |
T |
|
| Q |
201 |
acgaagcagcgaagtggcgttggcgt |
226 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
39210267 |
acgaagcagccaagtggcgttggcgt |
39210292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University