View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15145_low_5 (Length: 421)

Name: NF15145_low_5
Description: NF15145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15145_low_5
NF15145_low_5
[»] chr4 (2 HSPs)
chr4 (36-405)||(7171323-7171702)
chr4 (36-403)||(7169930-7170290)
[»] chr2 (1 HSPs)
chr2 (285-387)||(19993878-19993980)
[»] chr8 (1 HSPs)
chr8 (151-244)||(11434086-11434179)
[»] chr1 (6 HSPs)
chr1 (285-405)||(25427617-25427736)
chr1 (167-265)||(13091047-13091144)
chr1 (147-197)||(26645739-26645789)
chr1 (304-387)||(17621964-17622047)
chr1 (147-185)||(10916667-10916705)
chr1 (338-405)||(26645949-26646015)
[»] chr5 (1 HSPs)
chr5 (304-384)||(33699882-33699962)
[»] chr7 (3 HSPs)
chr7 (321-387)||(11728478-11728544)
chr7 (55-117)||(15963415-15963476)
chr7 (149-197)||(27223231-27223279)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 36 - 405
Target Start/End: Complemental strand, 7171702 - 7171323
Alignment:
Q  36 ttatgtcaagaatttctgcatctgaaaaa-gatcagaagtagaaaagatcaaattgttttgaaaaatatccaaatatattctctaacattggattgcaaa 134  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  7171702 ttatgtcaagaatttctgcatctgaaaaaagatcagaagtagaaaagatcaaattgttttgaaaaatatccaaatatattcactaacattagattgcaaa 7171603  T
Q  135 cacaaatacact---------attatatctttgggacatattttatagtgtatttgaaaagttcatattcacatgtctgtgatcataataaacttagaaa 225  Q
    ||||||||| ||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7171602 cacaaatacgctcaagcctccattatatctttgggacatattttatagtgtatttgaaaagttcatattcacatgtttgtgatcataataaacttagaaa 7171503  T
Q  226 aataaatgtttagattcactttagtgtaatcggttggaacatagagaggtcactctgaaatctaattaattctttgcaaagatcaaaatcacaataacaa 325  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7171502 aataaatgtttagattcactttagtgtgatcggttggaacatagagaggtcactctgaaatctaattaattctttgcaaagatcaaaatcacaataacaa 7171403  T
Q  326 ttgtgtaatttgttgtaaagcttcagtaatcccctttcgagtataaaggtggattgtgtggtcgattaaagtctgaagag 405  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7171402 ttgtgtaatttgttgtaaagcttcagtaatcccctttcgaatataaaggtggattgtgtggtcgattaaagtctgaagag 7171323  T

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Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 36 - 403
Target Start/End: Complemental strand, 7170290 - 7169930
Alignment:
Q  36 ttatgtcaagaatttctgcatctgaaaaagatcagaagtagaaaagatcaaattgttttgaaaaatatccaaatatattctctaacattggattgcaaac 135  Q
    ||||||||||||||| || |||| |||||||||| ||||||||||||||| |||||||  ||||| |||||||||||||||| |||||| |||||||| |    
T  7170290 ttatgtcaagaatttatgtatctcaaaaagatcaaaagtagaaaagatcagattgttta-aaaaagatccaaatatattctcaaacattagattgcaagc 7170192  T
Q  136 acaaatacact---------attatatctttgggacatattttatagtgtatttgaaaagttcatattcacatgtctgtgatcataataaacttagaaaa 226  Q
    |||||||||||         ||||||||| ||| |||| || |||||||||||||||||||||||||| |||||| ||||||||||  ||||||||||||    
T  7170191 acaaatacactcaagcctccattatatctctggaacatcttctatagtgtatttgaaaagttcatatttacatgtgtgtgatcatatgaaacttagaaaa 7170092  T
Q  227 ataaatgtttagattcactttagtgtaatcggttggaacatagagaggtcactctgaaatctaattaattctttgcaaagatcaaaatcacaataacaat 326  Q
    |||||||||||||||||||||||||  ||| ||| |||| ||||||||||||  | | |||| ||               ||||||||||||||||||||    
T  7170091 ataaatgtttagattcactttagtgcgatcagtttgaacctagagaggtcaccataagatcttat---------------atcaaaatcacaataacaat 7170007  T
Q  327 tgtgtaatttgttgtaaagcttcagtaatcccctttcgagtataaaggtggattgtgtggtcgattaaagtctgaag 403  Q
    ||||||||||||||||||||||| |||||||  ||| | ||||||||||||||||||||||||||||||||||||||    
T  7170006 tgtgtaatttgttgtaaagcttcggtaatcctatttagggtataaaggtggattgtgtggtcgattaaagtctgaag 7169930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 387
Target Start/End: Complemental strand, 19993980 - 19993878
Alignment:
Q  285 atctaattaattctttgcaaagatcaaaatcacaataacaattgtgtaatttgttgtaaagcttcagtaatcccctttcgagtataaaggtggattgtgt 384  Q
    |||||||| |||||||  ||||||||| ||||||| ||||||||| ||||  | |||||||||||| |||||| |||| | |||| ||||||||||||||    
T  19993980 atctaattgattctttttaaagatcaagatcacaagaacaattgtataataagatgtaaagcttcactaatcctctttagggtattaaggtggattgtgt 19993881  T
Q  385 ggt 387  Q
    |||    
T  19993880 ggt 19993878  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 11434086 - 11434179
Alignment:
Q  151 tatctttgggacatattttatagtgtatttgaaaagttcatattcacatgtctgtgatcataataaacttagaaaaataaatgtttagattcac 244  Q
    ||||||||| | |||||||||||||||||||||||||||| |||||| ||| |||||||| | | |||||| | ||| ||| ||| ||||||||    
T  11434086 tatctttggaatatattttatagtgtatttgaaaagttcaaattcacttgtgtgtgatcagattgaacttatataaacaaaagttcagattcac 11434179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 25427736 - 25427617
Alignment:
Q  285 atctaattaattctttgcaaagatcaaaatcacaataacaattgtgtaatttgttgtaaagcttcagtaatcccctttcgagtataaaggtggattgtgt 384  Q
    |||||||| |||||||| ||| ||||| |||||||||||| || ||||||   ||||||||||||| || ||| |||| |  |||||||| |||||||||    
T  25427736 atctaattgattctttgtaaaaatcaagatcacaataacatttatgtaatcaattgtaaagcttcattattcctcttt-ggttataaaggaggattgtgt 25427638  T
Q  385 ggtcgattaaagtctgaagag 405  Q
    ||| | |||||||| ||||||    
T  25427637 ggtagcttaaagtccgaagag 25427617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 13091047 - 13091144
Alignment:
Q  167 tttatagtgtatttgaaaagttcatattcacatgtctgtgatcataataaacttagaaaaataaatgtttagattcactttagtgtaatcggttggaac 265  Q
    ||||||||  ||||||||| ||||||||||||||| |||||||| | | |||||||| ||| ||| |||| |||||||  |||||||||||||| ||||    
T  13091047 tttatagtacatttgaaaatttcatattcacatgtgtgtgatcagattgaacttagagaaacaaaagtttggattcac-ctagtgtaatcggtttgaac 13091144  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 26645739 - 26645789
Alignment:
Q  147 attatatctttgggacatattttatagtgtatttgaaaagttcatattcac 197  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||    
T  26645739 attacatctttggaacatcttttatagtgtatttgaaaagttcatattcac 26645789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 17621964 - 17622047
Alignment:
Q  304 aagatcaaaatcacaataacaattgtgtaatttgttgtaaagcttcagtaatcccctttcgagtataaaggtggattgtgtggt 387  Q
    |||||| ||||||||| |||||||||||||    |||||||||||||  ||||| ||||    |||||||||||||||||||||    
T  17621964 aagatcgaaatcacaagaacaattgtgtaagcatttgtaaagcttcaccaatcctctttatgctataaaggtggattgtgtggt 17622047  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 10916667 - 10916705
Alignment:
Q  147 attatatctttgggacatattttatagtgtatttgaaaa 185  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  10916667 attatatctttggaacatcttttatagtgtatttgaaaa 10916705  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 405
Target Start/End: Original strand, 26645949 - 26646015
Alignment:
Q  338 ttgtaaagcttcagtaatcccctttcgagt-ataaaggtggattgtgtggtcgattaaagtctgaagag 405  Q
    ||||||||||||| |||||  |||| |||| |||||||||||||||||||| | |||||||||||||||    
T  26645949 ttgtaaagcttcactaatcttcttt-gagttataaaggtggattgtgtggtag-ttaaagtctgaagag 26646015  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 33699962 - 33699882
Alignment:
Q  304 aagatcaaaatcacaataacaattgtgtaatttgttgtaaagcttcagtaatcccctttcgagtataaaggtggattgtgt 384  Q
    |||||||| ||||||| |||||||| || ||   ||||||||||||| |||||| |||| | |||||||||||||||||||    
T  33699962 aagatcaagatcacaagaacaattgagtcatcaattgtaaagcttcactaatcctctttagggtataaaggtggattgtgt 33699882  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 11728544 - 11728478
Alignment:
Q  321 aacaattgtgtaatttgttgtaaagcttcagtaatcccctttcgagtataaaggtggattgtgtggt 387  Q
    |||||||||||||   |||||||||||||| |||||| |||| |  |||||||||||||||||||||    
T  11728544 aacaattgtgtaaacagttgtaaagcttcattaatcctctttaggatataaaggtggattgtgtggt 11728478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 15963476 - 15963415
Alignment:
Q  55 atctgaaaaagatcagaagtagaaaagatcaaattgttttgaaaaatatccaaatatattctc 117  Q
    ||||||||||||||||||| ||||||||||| ||||  |||||||||||||||| || |||||    
T  15963476 atctgaaaaagatcagaagcagaaaagatcagattg-cttgaaaaatatccaaacatcttctc 15963415  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 27223231 - 27223279
Alignment:
Q  149 tatatctttgggacatattttatagtgtatttgaaaagttcatattcac 197  Q
    ||||||||||  |||||||||| | ||||||||||||||||| ||||||    
T  27223231 tatatctttgacacatattttacaatgtatttgaaaagttcaaattcac 27223279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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