View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15145_low_6 (Length: 411)
Name: NF15145_low_6
Description: NF15145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15145_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 215 - 396
Target Start/End: Original strand, 39652701 - 39652878
Alignment:
| Q |
215 |
ttataaactttcttaagaacaacattaaagaaaaaagattctgatttctaagaatgatagcaagtgagtggtggttctaaatatccatcaactgtgcatt |
314 |
Q |
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| T |
39652701 |
ttataaactttcttaagaacaacattaaagaaaaaagattgtgatttctaagaatgataacaagtg----gtggttctaaatatccatcaactgtgcatt |
39652796 |
T |
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| Q |
315 |
gaggacgtagcccaattacaactcgacaccacaaaccttcatttctagaaagaaactgatttaaaaactcaataacaattct |
396 |
Q |
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| T |
39652797 |
gaggacgtagcccaattacaactcgacaccacaaaccttcatttctagaaagaaactgatttaaaaactcaataacaattct |
39652878 |
T |
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Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 39652108 - 39652185
Alignment:
| Q |
130 |
ttggacaagacatatctattgtatcttagcgaaccttcaagatcacaatccaattgaggaaactttctttttcttgac |
207 |
Q |
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| T |
39652108 |
ttggacaagacatatctattgtatcttagcgaacctttaagatcacaatccaattgaggaaactttctttttcttgac |
39652185 |
T |
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