View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15145_low_7 (Length: 405)

Name: NF15145_low_7
Description: NF15145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15145_low_7
NF15145_low_7
[»] chr7 (10 HSPs)
chr7 (116-221)||(31056045-31056150)
chr7 (299-380)||(31055885-31055966)
chr7 (29-110)||(17500799-17500880)
chr7 (29-110)||(17552334-17552415)
chr7 (33-105)||(49089057-49089129)
chr7 (29-80)||(30391248-30391299)
chr7 (29-105)||(5724140-5724216)
chr7 (29-81)||(27070586-27070638)
chr7 (29-81)||(27207675-27207727)
chr7 (29-78)||(47644811-47644860)
[»] chr8 (10 HSPs)
chr8 (29-113)||(29910097-29910181)
chr8 (29-110)||(41304870-41304951)
chr8 (29-93)||(5642295-5642359)
chr8 (29-93)||(5644236-5644300)
chr8 (29-112)||(27631049-27631132)
chr8 (29-114)||(11155766-11155851)
chr8 (33-70)||(41005870-41005907)
chr8 (29-105)||(8074618-8074694)
chr8 (29-80)||(323998-324049)
chr8 (33-66)||(20683633-20683666)
[»] chr1 (17 HSPs)
chr1 (29-111)||(24775077-24775159)
chr1 (29-111)||(33422106-33422188)
chr1 (29-111)||(44112556-44112638)
chr1 (33-112)||(44641789-44641868)
chr1 (29-111)||(49589859-49589941)
chr1 (29-114)||(52417633-52417718)
chr1 (29-112)||(50017309-50017392)
chr1 (29-111)||(30530286-30530368)
chr1 (29-119)||(49596343-49596433)
chr1 (29-105)||(34002213-34002289)
chr1 (58-114)||(39220326-39220382)
chr1 (29-93)||(40139215-40139279)
chr1 (29-111)||(33669710-33669792)
chr1 (29-105)||(52369004-52369080)
chr1 (29-80)||(4154684-4154735)
chr1 (29-112)||(4511663-4511746)
chr1 (46-105)||(52078540-52078599)
[»] chr3 (7 HSPs)
chr3 (29-110)||(622347-622428)
chr3 (29-105)||(44334694-44334770)
chr3 (29-105)||(39932245-39932321)
chr3 (29-93)||(37323769-37323833)
chr3 (29-80)||(11233949-11234000)
chr3 (29-66)||(3484859-3484896)
chr3 (29-105)||(26668942-26669018)
[»] chr2 (6 HSPs)
chr2 (29-110)||(546273-546354)
chr2 (29-111)||(7497878-7497960)
chr2 (30-105)||(6666123-6666198)
chr2 (29-82)||(7687854-7687907)
chr2 (29-115)||(35965684-35965770)
chr2 (31-105)||(10389323-10389397)
[»] scaffold0111 (1 HSPs)
scaffold0111 (29-103)||(36763-36837)
[»] chr5 (10 HSPs)
chr5 (29-110)||(42825216-42825297)
chr5 (29-101)||(9277509-9277580)
chr5 (29-114)||(39840587-39840672)
chr5 (30-104)||(20125493-20125567)
chr5 (29-110)||(34952293-34952374)
chr5 (33-111)||(18638728-18638806)
chr5 (29-114)||(33743217-33743302)
chr5 (29-103)||(3722971-3723045)
chr5 (29-111)||(30301312-30301394)
chr5 (29-117)||(16292131-16292219)
[»] scaffold0238 (1 HSPs)
scaffold0238 (29-113)||(16493-16577)
[»] chr6 (6 HSPs)
chr6 (29-104)||(23633219-23633294)
chr6 (29-81)||(3800696-3800748)
chr6 (29-112)||(7693417-7693500)
chr6 (29-110)||(30622126-30622207)
chr6 (33-110)||(19788964-19789041)
chr6 (29-111)||(14569269-14569351)
[»] chr4 (9 HSPs)
chr4 (29-111)||(1688315-1688397)
chr4 (29-104)||(4514159-4514234)
chr4 (29-109)||(42516736-42516816)
chr4 (29-80)||(10096660-10096711)
chr4 (29-80)||(31147333-31147384)
chr4 (29-80)||(34114035-34114086)
chr4 (33-104)||(45274369-45274440)
chr4 (29-82)||(35332806-35332859)
chr4 (29-114)||(44133633-44133718)
[»] scaffold0020 (1 HSPs)
scaffold0020 (29-111)||(156008-156090)
[»] scaffold0014 (1 HSPs)
scaffold0014 (29-105)||(199368-199444)
[»] scaffold0057 (1 HSPs)
scaffold0057 (30-87)||(21485-21542)
[»] scaffold0194 (1 HSPs)
scaffold0194 (29-81)||(29727-29779)
[»] scaffold0504 (2 HSPs)
scaffold0504 (73-105)||(10640-10672)
scaffold0504 (31-71)||(10662-10702)
[»] scaffold0154 (1 HSPs)
scaffold0154 (29-105)||(4417-4492)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 31056150 - 31056045
Alignment:
Q  116 aaaaaatgattctttaattcaacttagtggtcaaattaagtctgccttaaaggtagtgtagtactaaataaatacatatttattggattgcatgggagct 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31056150 aaaaaatgattctttgattcaacttagtggtcaaattaagtctgcctcaaaggtagtgtagtactaaataaatacatatttattggattccatgggagct 31056051  T
Q  216 tcttca 221  Q
    ||||||    
T  31056050 tcttca 31056045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 31055966 - 31055885
Alignment:
Q  299 atgggatcaatttgtttttataaatatattaaatttcatttgtagtcactctctacggtgctacatgtgcaacctgcaacct 380  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  31055966 atgggatcaatttatttttataaatatattaaatttcatttgtagtcactctataccgtgctacatgtgcaacctgcaacct 31055885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 17500799 - 17500880
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctct 110  Q
    |||||||||||||||| ||||| |||||||| |||||||||| ||||||||||  |||| |||||  |||||||||| ||||    
T  17500799 attgttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactct 17500880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 17552415 - 17552334
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctct 110  Q
    |||||||||||||||| ||||| |||||||| |||||||||| ||||||||||  |||| |||||  |||||||||| ||||    
T  17552415 attgttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactct 17552334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 49089129 - 49089057
Alignment:
Q  33 ttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    |||||||||||||||||| |||||||| |||||| ||| ||||||||||| |||| |||||  ||||||||||    
T  49089129 ttttggaccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcagaaattgttgtacatatatcact 49089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 30391248 - 30391299
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgt 80  Q
    |||||||||||||||||||||| ||| ||||||||||| ||| |||||||||    
T  30391248 attgttttggaccaatgagaagagagtaaataaaagttgtcatcaaagttgt 30391299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 5724140 - 5724216
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| | || |||||  |||| |||||  ||||||||||    
T  5724140 attgttttggaccaatgaaaagagagaaaataaaagttgtcatccaatttgtcttaaatggttgtacatatatcact 5724216  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 27070638 - 27070586
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtc 81  Q
    |||||||||||||||||||||| |||||||| | |||| ||| ||||||||||    
T  27070638 attgttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtc 27070586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 27207675 - 27207727
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtc 81  Q
    |||||||||||||||||||||| |||||||| | |||| ||| ||||||||||    
T  27207675 attgttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtc 27207727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 47644811 - 47644860
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagtt 78  Q
    |||||||||||||||||||||| ||| |||| |||||| ||| |||||||    
T  47644811 attgttttggaccaatgagaagagagcaaatgaaagttgtcatcaaagtt 47644860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 29910181 - 29910097
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctttt 113  Q
    ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||    
T  29910181 attgttttgaaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcaaaaatggttgtcaatatatcactactctttt 29910097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 41304951 - 41304870
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctct 110  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||    
T  41304951 attgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaattgttgtcaatatatcactactct 41304870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 5642359 - 5642295
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgt 93  Q
    |||||||||||||||| ||||| ||||||||||||||| ||| ||||||| ||  ||||||||||    
T  5642359 attgttttggaccaataagaagagagaaaataaaagttgtcatcaaagttatctcaaatagttgt 5642295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 5644300 - 5644236
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgt 93  Q
    |||||||||||||||| ||||| ||||||||||||||| ||| ||||||| ||  ||||||||||    
T  5644300 attgttttggaccaataagaagagagaaaataaaagttgtcatcaaagttatctcaaatagttgt 5644236  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 27631049 - 27631132
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctcttt 112  Q
    |||||||| ||||||||| ||| |||||||||| |||| ||| |||||||||||  ||| |||||  |||||||||| ||||||    
T  27631049 attgtttttgaccaatgaaaagagagaaaataatagttgtcatcaaagttgtcaccaatggttgtacatatatcactactcttt 27631132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 11155851 - 11155766
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctcttttt 114  Q
    |||||||||||| ||||| ||  || |||||||||||| ||| ||||||||||| |||| ||| |  |||||||||| ||||||||    
T  11155851 attgttttggactaatgaaaaaagaaaaaataaaagttgtcatcaaagttgtcacaaatggttctacatatatcactactcttttt 11155766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 41005870 - 41005907
Alignment:
Q  33 ttttggaccaatgagaagggagaaaataaaagttatca 70  Q
    |||||||||||||||||| |||||||||||||||||||    
T  41005870 ttttggaccaatgagaagagagaaaataaaagttatca 41005907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 8074694 - 8074618
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    ||||||||| |||||| ||||| |||||||| |||||| ||| ||||||||||||| ||  ||||  ||||||||||    
T  8074694 attgttttgaaccaataagaagagagaaaatgaaagttgtcatcaaagttgtcaaatatgattgtacatatatcact 8074618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 324049 - 323998
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgt 80  Q
    |||||||||||||||| ||||| ||| ||||||||||| ||| |||||||||    
T  324049 attgttttggaccaataagaagagagtaaataaaagttgtcatcaaagttgt 323998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 20683633 - 20683666
Alignment:
Q  33 ttttggaccaatgagaagggagaaaataaaagtt 66  Q
    ||||||||||||||||| ||||||||||||||||    
T  20683633 ttttggaccaatgagaaaggagaaaataaaagtt 20683666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 24775077 - 24775159
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctt 111  Q
    |||||||||||||||||||||| |||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||    
T  24775077 attgttttggaccaatgagaagagagaaaataaaaattgtcaacaaagttgtcaaaaatggttgtcaatatatcactactctt 24775159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 33422188 - 33422106
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctt 111  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||    
T  33422188 attgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactctt 33422106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 44112556 - 44112638
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctt 111  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||    
T  44112556 attgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactctt 44112638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 44641868 - 44641789
Alignment:
Q  33 ttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctcttt 112  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||| ||||||||||||||||| ||||||    
T  44641868 ttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttatcacaaatggttgtcaatatatcactactcttt 44641789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 49589941 - 49589859
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctt 111  Q
    |||||| | ||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| |||||    
T  49589941 attgttatagaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatagttatcaatatatcactactctt 49589859  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 52417633 - 52417718
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctcttttt 114  Q
    |||||||||||||||| ||||| |||||||| |||||||||| |||||||||   ||||||||||  |||||||||| ||||||||    
T  52417633 attgttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgttccaaatagttgtatatatatcactactcttttt 52417718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 50017392 - 50017309
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctcttt 112  Q
    |||||||||||||||||| ||| |||||| | |||||||||||||||||||||  |||| |||||  |||||||| | ||||||    
T  50017392 attgttttggaccaatgaaaagagagaaattgaaagttatcaacaaagttgtctcaaatggttgtacatatatcagtactcttt 50017309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 30530368 - 30530286
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctt 111  Q
    |||||||||||||||| ||||| |||||||| |||||| ||| ||||||||||  |||| |||||  |||||||||| |||||    
T  30530368 attgttttggaccaataagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactctt 30530286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 49596343 - 49596433
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctttttgaaaa 119  Q
    ||||||||||||||||||||| |||| |||| |||||||||| |||||||||   |||| |||||  |||||||| | ||||||| |||||    
T  49596343 attgttttggaccaatgagaatggagcaaattaaagttatcatcaaagttgtaccaaatggttgtacatatatcattactcttttagaaaa 49596433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 34002289 - 34002213
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    |||||||||||||||| ||||| |||||||| |||||| | | ||||||||||  ||||||||||  ||||||||||    
T  34002289 attgttttggaccaataagaagagagaaaatgaaagttgtgatcaaagttgtcccaaatagttgtacatatatcact 34002213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 39220326 - 39220382
Alignment:
Q  58 ataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctcttttt 114  Q
    |||||| || ||||||||||||||| |||| ||||||||||||||||| ||||||||    
T  39220326 ataaaaattgtcaacaaagttgtcacaaatggttgtcaatatatcactactcttttt 39220382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 40139215 - 40139279
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgt 93  Q
    |||||||||||| ||||||||| |||||||| |||||| ||| |||| |||||| ||||||||||    
T  40139215 attgttttggacaaatgagaagagagaaaatgaaagttgtcatcaaacttgtcacaaatagttgt 40139279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 33669792 - 33669710
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctt 111  Q
    |||||||||||||||||||||| || ||||| | |||| ||| ||||||||||  |||| |||||  |||||||||| |||||    
T  33669792 attgttttggaccaatgagaagagaaaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactctt 33669710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 52369080 - 52369004
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    |||||||||||||||||||||  ||| |||| |||||| ||| |||||||||   ||||||||||  ||||||||||    
T  52369080 attgttttggaccaatgagaatagagcaaatgaaagttgtcatcaaagttgtactaaatagttgtacatatatcact 52369004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 4154684 - 4154735
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgt 80  Q
    |||||||||||||||| ||||| ||| |||||||||||||||  ||||||||    
T  4154684 attgttttggaccaataagaagagagtaaataaaagttatcattaaagttgt 4154735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 4511746 - 4511663
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctcttt 112  Q
    |||||||||||||||||||||| || ||||| |||||| ||| | ||||||||  |||| |||||  |||||||| | ||||||    
T  4511746 attgttttggaccaatgagaagagaaaaaatgaaagttgtcatctaagttgtcccaaatggttgtacatatatcattactcttt 4511663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 52078540 - 52078599
Alignment:
Q  46 agaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    ||||| |||||||| |||||||||| |||||||||  |||||||||||  ||||||||||    
T  52078540 agaagagagaaaatgaaagttatcatcaaagttgttcaaaatagttgtacatatatcact 52078599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 622428 - 622347
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctct 110  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||    
T  622428 attgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 622347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 44334770 - 44334694
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    |||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||| |||||||||||||||||    
T  44334770 attgttttggaccaatgagaagagagaaaataaaaattgtcaacaaagttgtcacaaatggttgtcaatatatcact 44334694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 39932245 - 39932321
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    ||||||||| |||||||||||  ||||||||||||||| ||||||||||||||||||||  |||||| |||||||||    
T  39932245 attgttttgaaccaatgagaaaagagaaaataaaagttgtcaacaaagttgtcaaaaatgattgtcagtatatcact 39932321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 37323769 - 37323833
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgt 93  Q
    |||| ||||||||||| |||||||||||||| ||| || ||| ||||||||||  ||||||||||    
T  37323769 attggtttggaccaataagaagggagaaaatgaaaattgtcatcaaagttgtcccaaatagttgt 37323833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 11234000 - 11233949
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgt 80  Q
    ||||||||||| |||||||||| ||| ||||||||||| ||| |||||||||    
T  11234000 attgttttggatcaatgagaagagagtaaataaaagttgtcatcaaagttgt 11233949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 3484859 - 3484896
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagtt 66  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  3484859 attgttttggaccaatgagaagagagaaaatgaaagtt 3484896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 26668942 - 26669018
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    |||||||||||||||||| ||  |||||||| |||||| ||| || |||||||  |||| |||||  ||||||||||    
T  26668942 attgttttggaccaatgaaaaatgagaaaatgaaagttgtcatcatagttgtcctaaatggttgtacatatatcact 26669018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 546354 - 546273
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctct 110  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||    
T  546354 attgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 546273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 7497960 - 7497878
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctt 111  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||    
T  7497960 attgttttgaaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactctt 7497878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 6666123 - 6666198
Alignment:
Q  30 ttgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| |||||| ||||  || |||||||||||||    
T  6666123 ttgttttggaccaatgagaagagagaaaataaaagttgtcaacaaaattgtcacaaatgattatcaatatatcact 6666198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 7687854 - 7687907
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtca 82  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  7687854 attgttttagaccaatgagaagagagaaaataaaagttatcaacaaagttgtca 7687907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 35965684 - 35965770
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctttttg 115  Q
    ||||||||| |||||||||||  |||||| |||||||||||| ||||||| ||| |||| |||||  |||||||||| ||| |||||    
T  35965684 attgttttgaaccaatgagaatagagaaagtaaaagttatcatcaaagttctcataaatggttgtacatatatcactactcattttg 35965770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 10389323 - 10389397
Alignment:
Q  31 tgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    |||||||||||||||||||| |||||| | |||||  ||| ||||||||||  |||| |||||  ||||||||||    
T  10389323 tgttttggaccaatgagaagagagaaagtgaaagtcgtcaccaaagttgtcccaaatggttgtacatatatcact 10389397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 36837 - 36763
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatca 103  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  36837 attgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcaaaaatgattgtcaatatatca 36763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 42825216 - 42825297
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctct 110  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||| |||||| |||| ||||||||||||||||| ||||    
T  42825216 attgttttggaccaatgagaagagagaaaataaaagttgtcaacaaaattgtcacaaatggttgtcaatatatcactactct 42825297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 9277580 - 9277509
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatat 101  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |||||||||||||    
T  9277580 attgttatggaccaatgagaagagagaaaataaaagttat-aacaaagttgtcataaatggttgtcaatatat 9277509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 39840672 - 39840587
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctcttttt 114  Q
    |||||||||||||||||||||| | ||||||||||||| ||| ||||||| ||| ||||||||||  |||||||||| || |||||    
T  39840672 attgttttggaccaatgagaagagggaaaataaaagttgtcatcaaagttatcacaaatagttgtacatatatcactacttttttt 39840587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 20125493 - 20125567
Alignment:
Q  30 ttgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcac 104  Q
    ||||||| ||||||||||||| |||||||| |||||| ||| ||||||||||  ||||||||||  |||||||||    
T  20125493 ttgtttttgaccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatagttgtatatatatcac 20125567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 34952374 - 34952293
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctct 110  Q
    |||||||||||||||| ||||| ||||||||||||||| ||| ||||||| ||  ||||| ||||  |||||||||| ||||    
T  34952374 attgttttggaccaataagaagagagaaaataaaagttgtcatcaaagttatcccaaataattgtacatatatcactactct 34952293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 18638806 - 18638728
Alignment:
Q  33 ttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctt 111  Q
    |||||||||||| ||||  ||||||||||||||| ||| ||||||||||  |||| |||||  |||||||||| |||||    
T  18638806 ttttggaccaataagaaaagagaaaataaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactctt 18638728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 33743302 - 33743217
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctcttttt 114  Q
    ||||||||||| |||||||||| ||| ||||||||||| ||| |||||||||   ||||  ||||  |||||||||| ||||||||    
T  33743302 attgttttggatcaatgagaagagagcaaataaaagttgtcatcaaagttgtaccaaatgattgtacatatatcactactcttttt 33743217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 3723045 - 3722971
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatca 103  Q
    |||||||||||||||| | ||| |||||||| |||||| ||| ||||||||||  |||| |||||  ||||||||    
T  3723045 attgttttggaccaataaaaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatca 3722971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 30301312 - 30301394
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctt 111  Q
    |||||||||||| ||||||||| ||| |||| |||||| ||| ||||||||| | | || |||||  |||||||||| |||||    
T  30301312 attgttttggacaaatgagaagagaggaaatgaaagttgtcatcaaagttgttacatatggttgtacatatatcactactctt 30301394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 16292219 - 16292131
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctttttgaa 117  Q
    |||||||| ||||||| | ||| |||||||||| |||| ||  |||||||||||  ||| |||||  |||||||||| ||||| |||||    
T  16292219 attgtttttgaccaataaaaagcgagaaaataatagttgtcttcaaagttgtcatcaatggttgtacatatatcactactcttcttgaa 16292131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 16493 - 16577
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctttt 113  Q
    |||||| ||||||||||||||  ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||||    
T  16493 attgttatggaccaatgagaatagagaaaataaaagttgtcaacaaagttgtcataaatggttgtcaatatatcactactctttt 16577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 23633294 - 23633219
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcac 104  Q
    |||||||||||||||||| ||  ||||||||||||||| |||||||| |||||| |||| ||||||||||||||||    
T  23633294 attgttttggaccaatgaaaaaagagaaaataaaagttgtcaacaaaattgtcagaaatggttgtcaatatatcac 23633219  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 3800696 - 3800748
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtc 81  Q
    |||||||||||||||||||||| |||||||| |||||| ||||||||||||||    
T  3800696 attgttttggaccaatgagaagagagaaaatgaaagttgtcaacaaagttgtc 3800748  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 7693417 - 7693500
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctcttt 112  Q
    |||||||||||||||| ||||| |||||||||||| || ||| ||||||||||  |||| |||||  |||||||||| ||||||    
T  7693417 attgttttggaccaataagaagagagaaaataaaaattgtcatcaaagttgtcccaaatggttgtacatatatcactactcttt 7693500  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 30622126 - 30622207
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctct 110  Q
    |||||||||||||||| ||||| || ||||| |||||| ||| ||||||||||  ||||||||||  |||||||||| ||||    
T  30622126 attgttttggaccaataagaagagaaaaaatgaaagttgtcatcaaagttgtcccaaatagttgtacatatatcactactct 30622207  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 19789041 - 19788964
Alignment:
Q  33 ttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctct 110  Q
    |||||||||||||||||| |||||||| | |||| ||| ||||||||||  |||| |||||  |||||||||| ||||    
T  19789041 ttttggaccaatgagaagagagaaaatcagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 19788964  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 14569269 - 14569351
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctt 111  Q
    |||||||||||||||||| ||| |||| ||||||| |||||| ||||||| ||  |||| |||||   ||||||||| |||||    
T  14569269 attgttttggaccaatgaaaagagagataataaaatttatcatcaaagttatctcaaatggttgtacgtatatcactactctt 14569351  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 1688397 - 1688315
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctt 111  Q
    |||| ||||||||||||||||| ||||||||||||||| | || ||| |||||| |||| ||||||||||||||||| |||||    
T  1688397 attggtttggaccaatgagaagagagaaaataaaagttgtgaataaaattgtcacaaatggttgtcaatatatcactactctt 1688315  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 4514234 - 4514159
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcac 104  Q
    |||||||||||||||||||||| |||||||| ||| || ||| |||||||||||  |||||||||  |||||||||    
T  4514234 attgttttggaccaatgagaagagagaaaatgaaaattgtcatcaaagttgtcatgaatagttgtacatatatcac 4514159  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 42516736 - 42516816
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctc 109  Q
    ||||| |||||||||||||||| || ||||| |||||| ||| |||| |||||| |||| |||||  ||||||||||||||    
T  42516736 attgtcttggaccaatgagaagagaaaaaatgaaagttgtcatcaaaattgtcacaaatggttgtacatatatcactgctc 42516816  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 10096711 - 10096660
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgt 80  Q
    |||||||||||||||||||||| ||| |||| |||||| ||| |||||||||    
T  10096711 attgttttggaccaatgagaagagagcaaatgaaagttgtcatcaaagttgt 10096660  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 31147333 - 31147384
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgt 80  Q
    |||||||||||||||| ||||| ||||||||||||||| ||| | |||||||    
T  31147333 attgttttggaccaataagaagagagaaaataaaagttgtcatcgaagttgt 31147384  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 34114086 - 34114035
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgt 80  Q
    |||||||||||||||| ||||| |||||||| ||||||| || |||||||||    
T  34114086 attgttttggaccaataagaagagagaaaatgaaagttaccatcaaagttgt 34114035  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 45274369 - 45274440
Alignment:
Q  33 ttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcac 104  Q
    |||||||||||||| ||| |||||||| | |||| ||| ||||||||||  ||||||||||  |||||||||    
T  45274369 ttttggaccaatgaaaagagagaaaatgagagttgtcatcaaagttgtcccaaatagttgtacatatatcac 45274440  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 35332806 - 35332859
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtca 82  Q
    |||||||| ||||| ||| ||| |||||||||| |||||||| |||||||||||    
T  35332806 attgtttttgaccagtgaaaagagagaaaataatagttatcatcaaagttgtca 35332859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 44133633 - 44133718
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctcttttt 114  Q
    ||||||||||||||||  |||| ||| |||||||||||||||  |||||||| | | ||||||||  | |||||||  ||||||||    
T  44133633 attgttttggaccaataggaagagagtaaataaaagttatcattaaagttgttagatatagttgtacaaatatcacaactcttttt 44133718  T

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Target: scaffold0020 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 156008 - 156090
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcactgctctt 111  Q
    |||||||||||||||||||||| |||||||| | |||| ||| ||||||||||  |||| |||||  |||||||||| |||||    
T  156008 attgttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactctt 156090  T

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Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 199368 - 199444
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    |||||||||||||||| | ||| |||||||||||| ||||| | ||||||||||||||   |||||||| |||||||    
T  199368 attgttttggaccaataaaaagagagaaaataaaaattatctataaagttgtcaaaaaatattgtcaatttatcact 199444  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 21542 - 21485
Alignment:
Q  30 ttgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaat 87  Q
    ||||||||||||||||||||| |||||||| |||||| | | ||||||||||| ||||    
T  21542 ttgttttggaccaatgagaagagagaaaatgaaagttgttatcaaagttgtcacaaat 21485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 29779 - 29727
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtc 81  Q
    |||||||||||||||||| ||| |||||||| |||||| ||| ||||||||||    
T  29779 attgttttggaccaatgaaaagagagaaaatgaaagttgtcatcaaagttgtc 29727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 10672 - 10640
Alignment:
Q  73 aaagttgtcaaaaatagttgtcaatatatcact 105  Q
    ||||||||||||||| |||||||||||||||||    
T  10672 aaagttgtcaaaaatggttgtcaatatatcact 10640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 10702 - 10662
Alignment:
Q  31 tgttttggaccaatgagaagggagaaaataaaagttatcaa 71  Q
    |||||| ||||||||||||| ||||||||||||||| ||||    
T  10702 tgtttttgaccaatgagaagagagaaaataaaagttgtcaa 10662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 4417 - 4492
Alignment:
Q  29 attgttttggaccaatgagaagggagaaaataaaagttatcaacaaagttgtcaaaaatagttgtcaatatatcact 105  Q
    ||||||||| |||||||| ||| |||||||||| |||| ||| |||||||||||  ||| |||||  ||||||||||    
T  4417 attgttttg-accaatgaaaagagagaaaataatagttgtcatcaaagttgtcaccaatggttgtacatatatcact 4492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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