View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15145_low_9 (Length: 369)

Name: NF15145_low_9
Description: NF15145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15145_low_9
NF15145_low_9
[»] chr5 (1 HSPs)
chr5 (10-356)||(29838052-29838399)
[»] chr3 (12 HSPs)
chr3 (12-322)||(210208-210519)
chr3 (19-291)||(196964-197237)
chr3 (12-186)||(224827-225001)
chr3 (12-193)||(216941-217122)
chr3 (12-193)||(221886-222067)
chr3 (19-188)||(204956-205125)
chr3 (228-355)||(216808-216935)
chr3 (228-355)||(221753-221880)
chr3 (41-139)||(198274-198372)
chr3 (41-145)||(226110-226214)
chr3 (41-145)||(211667-211771)
chr3 (41-139)||(203584-203682)
[»] chr4 (2 HSPs)
chr4 (19-188)||(6903368-6903537)
chr4 (41-139)||(6904803-6904901)
[»] chr1 (1 HSPs)
chr1 (18-161)||(3808343-3808487)


Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 356
Target Start/End: Complemental strand, 29838399 - 29838052
Alignment:
Q  10 attattctataggatatggttgcttcatttctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttccta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29838399 attattctataggatatggttgcttcatttctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttccta 29838300  T
Q  110 tcctttcgaaactccaagtactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaacatgtgagaggcttcgg-aaaag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29838299 tcctttcgaaactccaagtactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaacatgtgagaggcttcggaaaaag 29838200  T
Q  209 gtcaaaaacatgtctaaatatgcttctaaaagagttgaggatgctgccaaagaactcaacccaaacaacccttattttcgttccaaaatcgttaagggaa 308  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29838199 gtcaaaaacatgtctaaatatgcttctaaaagagtagaggatgccgccaaagaactcaacccaaacaacccttattttcgttccaaaatcgttaagggaa 29838100  T
Q  309 aatatgcggtgagatttttactttaaagtaaatgttgagttatttatg 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29838099 aatatgcggtgagatttttactttaaagtaaatgttgagttatttatg 29838052  T

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Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 210519 - 210208
Alignment:
Q  12 tattctataggatatggttgcttcatttctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatc 111  Q
    |||||| || |||| ||||||||| | ||||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||    
T  210519 tattctttaagatacggttgcttcctgtctttcagatacgaagggaattcaaattttagcgttattatatttgatgcaacttctgttgaaatttgctatc 210420  T
Q  112 ctttcgaaactccaagtactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaacatgtgagaggcttcgg-aaaaggt 210  Q
    | ||  ||||||||||||||| ||||||| |||| ||  | | ||||||  |||  ||||||||||||||||||||| ||||||| |   || |||||||    
T  210419 cattaaaaactccaagtactagtggagaaacaaacaccgagtgtcctaggcctatgaaaaggtccaaggttgaaacaagtgagagtccagggaaaaaggt 210320  T
Q  211 caaaaacatgtctaaatatgcttctaaaagagttgaggatgctgccaaagaactcaacccaaacaacccttattttcgttccaaaatcgttaagggaaaa 310  Q
    ||||| ||||||||| ||||||| |||||| |  |||||||||||||| | | ||||||| || |||||| |||||||||| ||||||   ||||||| |    
T  210319 caaaagcatgtctaattatgcttataaaagggcagaggatgctgccaatgcattcaacccgaaaaaccctcattttcgttcaaaaatcaccaagggaaga 210220  T
Q  311 tatgcggtgaga 322  Q
     |||||||||||    
T  210219 catgcggtgaga 210208  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 197237 - 196964
Alignment:
Q  19 taggatatggttgcttcatttctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatcctttcga 118  Q
    |||| |||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||  ||||| ||  |    
T  197237 tagggtatggttgctacctatctttcaaatacgaagggaattcaaagtttagtgttattatatttgacgtaacttatgttgagatttgttatccattaaa 197138  T
Q  119 aactccaagtactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaacatgtgagaggcttcgg-aaaaggtcaaaaac 217  Q
    ||||||||||  ||||||||||||||| ||||| | | ||||| |||  ||||||||||||||||||||| ||||| | | | || |||||| ||||| |    
T  197137 aactccaagtgttaatggagaaccaaacacaaaatgtgctagtcctacgaaaaggtccaaggttgaaacaagtgagtgtcatgggaaaaaggccaaaagc 197038  T
Q  218 atgtctaaatatgcttctaaaagagttgaggatgctgccaaagaactcaacccaaacaacccttattttcgttc 291  Q
     |||||||| ||||||||| |||||  |||| ||||||||| ||| |||| ||||| |||||||||||| ||||    
T  197037 gtgtctaaacatgcttctacaagagcagaggttgctgccaatgaattcaaaccaaaaaacccttatttttgttc 196964  T

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Target: chr3; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 225001 - 224827
Alignment:
Q  12 tattctataggatatggttgcttcatttctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatc 111  Q
    |||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  225001 tattctttaagatatggttgcttcatgtctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgtaacttctgttgagatttgctatc 224902  T
Q  112 ctttcgaaactccaagtactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaa 186  Q
    |  || ||||||||||||||||||||||| |||| ||| | | ||||||  |||  |||||||||| ||||||||    
T  224901 cactcaaaactccaagtactaatggagaaacaaacacagagtgtcctagacctacgaaaaggtccagggttgaaa 224827  T

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Target: chr3; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 217122 - 216941
Alignment:
Q  12 tattctataggatatggttgcttcatttctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatc 111  Q
    ||||||||||| ||||||| |||| | | |||||||||||||||| ||||||||||||||||  |||||||||||||||||||| |||| |||| |||||    
T  217122 tattctatagggtatggttccttcctgtgtttcaaatatgaaggggattcaaagtttagtgtctttatatttgatgcaacttctattgagatttgctatc 217023  T
Q  112 ctttcgaaactccaagtactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaacatgtga 193  Q
    | ||| |||||| |||||| ||||||||| |||||||||| | || |||| |||| ||||||||||||||||||||| ||||    
T  217022 cattcaaaactcaaagtacaaatggagaaacaaaaacaaagtttcatagtcctaggaaaaggtccaaggttgaaacaagtga 216941  T

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Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 222067 - 221886
Alignment:
Q  12 tattctataggatatggttgcttcatttctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatc 111  Q
    ||||||||||| ||||||| |||| |   |||||||||||||||| |||||||||||| |||| |||||||||||| |||||||||||| |||| |||||    
T  222067 tattctatagggtatggttccttcttgcgtttcaaatatgaaggggattcaaagtttaatgttgttatatttgatgtaacttctgttgagatttgctatc 221968  T
Q  112 ctttcgaaactccaagtactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaacatgtga 193  Q
    | ||| |||||| ||||| |||||||||| |||| ||||| | || |||| |||| ||||||||||||||||||||| ||||    
T  221967 cattcaaaactcaaagtattaatggagaaacaaacacaaagtgtcatagtcctaggaaaaggtccaaggttgaaacaagtga 221886  T

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Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 204956 - 205125
Alignment:
Q  19 taggatatggttgcttcatttctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatcctttcga 118  Q
    |||||| |||||||| | | ||||||||||| ||||| |||||||||||||||||| |||||||||||| |||||| ||||| |||| ||||||  || |    
T  204956 taggatgtggttgctacctatctttcaaatacgaaggaaattcaaagtttagtgttgttatatttgatgtaacttcggttgagatttgctatccactcaa 205055  T
Q  119 aactccaagtactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaaca 188  Q
    |||||| ||||||||||||||| |||| ||| | | ||||| | |||||||||| || | ||||||||||    
T  205056 aactccgagtactaatggagaaacaaatacacaatgtcctactcctagaaaaagttcaagggttgaaaca 205125  T

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Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 228 - 355
Target Start/End: Complemental strand, 216935 - 216808
Alignment:
Q  228 atgcttctaaaagagttgaggatgctgccaaagaactcaacccaaacaacccttattttcgttccaaaatcgttaagggaaaatatgcggtgagattttt 327  Q
    |||||||||||||||  ||||| |||||||||||| | || ||||| |||||||||||| ||||||||||  |||||||||| |||| ||||||  ||||    
T  216935 atgcttctaaaagagcagaggaagctgccaaagaatttaatccaaaaaacccttatttttgttccaaaattcttaagggaaattatgtggtgaggatttt 216836  T
Q  328 actttaaagtaaatgttgagttatttat 355  Q
    ||||||||| ||||||||||||||||||    
T  216835 actttaaagcaaatgttgagttatttat 216808  T

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Target: chr3; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 228 - 355
Target Start/End: Complemental strand, 221880 - 221753
Alignment:
Q  228 atgcttctaaaagagttgaggatgctgccaaagaactcaacccaaacaacccttattttcgttccaaaatcgttaagggaaaatatgcggtgagattttt 327  Q
    ||||||||||||||   ||||| |||||||| ||| |||| ||||| |||||||| ||| ||||||||||  ||||| ||||||||| ||||||| ||||    
T  221880 atgcttctaaaagatcagaggaagctgccaaggaattcaatccaaaaaacccttacttttgttccaaaattcttaagagaaaatatgtggtgagaatttt 221781  T
Q  328 actttaaagtaaatgttgagttatttat 355  Q
    ||||||||| ||||||||||||||||||    
T  221780 actttaaagcaaatgttgagttatttat 221753  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 198372 - 198274
Alignment:
Q  41 tttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatcctttcgaaactccaagtactaatggaga 139  Q
    |||||| ||| |||||||||||||||||| |||| |||||| |||| ||||||||||||| ||||| ||| | ||| ||||||||||||||||||||||    
T  198372 tttcaactatcaagggaattcaaagtttaatgttgttatatatgatacaacttctgttgagatttcttattcattcaaaactccaagtactaatggaga 198274  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 226214 - 226110
Alignment:
Q  41 tttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatcctttcgaaactccaagtactaatggagaa 140  Q
    ||||||||||||||||||||||||||| | |||| ||||||  |||  |||||||||||| ||||| ||||| ||| ||||||  || ||||||||||||    
T  226214 tttcaaatatgaagggaattcaaagttcaatgttgttatatacgatagaacttctgttgagatttcttatccattccaaactcggaggactaatggagaa 226115  T
Q  141 ccaaa 145  Q
    |||||    
T  226114 ccaaa 226110  T

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Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 211771 - 211667
Alignment:
Q  41 tttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatcctttcgaaactccaagtactaatggagaa 140  Q
    ||||||||| ||||||||||||||||| | |||| ||||||  ||| ||||||||||||| ||||| ||||| ||| ||||||  || ||||||||||||    
T  211771 tttcaaatacgaagggaattcaaagttcaatgttgttatatacgatacaacttctgttgagatttcttatccattccaaactcggaggactaatggagaa 211672  T
Q  141 ccaaa 145  Q
     ||||    
T  211671 gcaaa 211667  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 203584 - 203682
Alignment:
Q  41 tttcaaatatgaagggaattcaaagtttagt-gttattatatttgatgcaacttctgttgaaatttcctatcctttcgaaactccaagtactaatggaga 139  Q
    |||||| |||||||| |||||||| ||| || ||| |||||| |||| |||||| |||||| ||||| ||||| ||| ||||| ||||||||||||||||    
T  203584 tttcaagtatgaaggaaattcaaa-tttcgtagttgttatatatgatccaacttttgttgagatttcttatccattcaaaacttcaagtactaatggaga 203682  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 6903537 - 6903368
Alignment:
Q  19 taggatatggttgcttcatttctttcaaatatgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatcctttcga 118  Q
    ||||||||||||||| | | ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||| ||||||  || |    
T  6903537 taggatatggttgctacctatctttcaaatacgaaggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctatccactcaa 6903438  T
Q  119 aactccaagtactaatggagaaccaaaaacaaattatcctagttctagaaaaaggtccaaggttgaaaca 188  Q
    |||||| ||||||||||||||| |||| ||| | | ||||| | |||||||||| |||| ||||||||||    
T  6903437 aactccgagtactaatggagaaacaaatacacaatgtcctactcctagaaaaagttccagggttgaaaca 6903368  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 6904901 - 6904803
Alignment:
Q  41 tttcaaatatgaagggaattcaaagtttagt-gttattatatttgatgcaacttctgttgaaatttcctatcctttcgaaactccaagtactaatggaga 139  Q
    |||||| ||||||| ||||||||| ||| || ||| |||||| |||| |||||| |||||| ||||| ||||| ||| ||||||||||||||||||||||    
T  6904901 tttcaagtatgaagagaattcaaa-tttcgtagttgttatatatgatccaacttttgttgagatttcttatccattcaaaactccaagtactaatggaga 6904803  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 3808487 - 3808343
Alignment:
Q  18 ataggatatggttgcttcatttctttcaaatatgaagggaattc-aaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatcctttc 116  Q
    |||||||||||||| | | |||||||||| |||||||| ||||| |||||||||||||||||||||||| | |||||||||||  |||| |||||| |||    
T  3808487 ataggatatggttggtacctttctttcaattatgaaggaaattccaaagtttagtgttattatatttgacgtaacttctgttgggatttgctatccgttc 3808388  T
Q  117 gaaactccaagtactaatggagaaccaaaaacaaattatcctagt 161  Q
     ||||||||||||||||| |||||||||| ||||| |||||||||    
T  3808387 aaaactccaagtactaatagagaaccaaacacaaagtatcctagt 3808343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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