View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_high_10 (Length: 375)
Name: NF15146_high_10
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 9471419 - 9471766
Alignment:
| Q |
13 |
cagacacctgacacgacagagacaccgtggcatgtagatgtagacaccgatgacaaattcatttaagaaaataacaataattgaatttaaccacatctga |
112 |
Q |
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| T |
9471419 |
cagacacctgacacgacagagacaccgtggcatgtagatgtagacaccgatgacaaattcatttaagaaaataacaataattgaatttaaccacatctga |
9471518 |
T |
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| Q |
113 |
taatgtggcgtcggacttctgtcgaacactaaacattccaataatctgaattgtcaatgctacataatttctgttttggttattaaaattgcaaaattca |
212 |
Q |
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| T |
9471519 |
taatgtggcgtcggacttctgtcgaacactaaacattccaataatctgaattgtcaatgctacataatttctgttttggtttttaaaattgcaaaattca |
9471618 |
T |
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| Q |
213 |
aacacttgtctcagtatctttgtgttttcttatggtcaaccaatccagaaattcaattcacactaaagggtctatgaaccaaaccagaaacttaaatcat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9471619 |
aacacttgtctcagtatctttgtgttttcttatggtcaaccaatccagaaattcaaatcacactaaagggtctatgaaccaaaccagaaacttaaatcat |
9471718 |
T |
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| Q |
313 |
caattcctcacctagtgatgggtcgatgaaccggatccgcttgtttct |
360 |
Q |
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| T |
9471719 |
caattcctcacctagtgatgggtcgatgaaccggatccgcttgtttct |
9471766 |
T |
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