View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_high_11 (Length: 358)
Name: NF15146_high_11
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 38878645 - 38878988
Alignment:
| Q |
1 |
aagcagcaaatccgttagcaagtaactcaacatcacgttaattaaaattattgaaacaaactttgtgaaactcaaagagaagatgattgacgagacaagt |
100 |
Q |
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| T |
38878645 |
aagcagcaaatccgttagcaagtaactcaacatcacgttaattaaaattattgaaacaaactttgtgaaactgaaagagaagatgattgacgagacaagt |
38878744 |
T |
|
| Q |
101 |
ctaaaaaactggagttagtttgcggttcggcgctcacagttatcgaaaaatgggattcaacgcagcggccaagtgtggagttataaatttgatatgagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
38878745 |
ctaaaaaactggagttagtttgcggttcggcgctcacagttatcgaaaaatgggattcaacgccgcggccgagtgtggagttataaatttgatatgagca |
38878844 |
T |
|
| Q |
201 |
tgtattttatttcatggtatagatagatagataaattatttgggtctcaacatgtttaaaaaataattataattcatgctaaggaatgttc--------c |
292 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38878845 |
tgtattttatttcacggtatagatagatagatagattatttgggtctcaacatgtttaaaaaataattataattcatgctaaggaatgttccagcaaggc |
38878944 |
T |
|
| Q |
293 |
agcaactatttcagaaagaatgaagccttatacatatagcttag |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38878945 |
agcaactatttcagaaagaatgaagccttatacatatagcttag |
38878988 |
T |
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