View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_high_13 (Length: 332)
Name: NF15146_high_13
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 11616078 - 11615772
Alignment:
| Q |
19 |
aatcacgtgcttggccgtttttgttggatggtcgtgatttgattggaattgcggctactgggtcaggttagttttgatgtttactgcatt----aattga |
114 |
Q |
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| T |
11616078 |
aatcacgtgcttggccgtttttgttggatggtcgtgatttgattggaattgcggctactgggtcaggttagttttgatgtttactgcattaattaattga |
11615979 |
T |
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| Q |
115 |
atttgattatcattttggtggttattttataattgttatttgttaccttgtaatattaatatttagtattagggtctgtttgaattggtttatttgagct |
214 |
Q |
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| T |
11615978 |
atttgattatcattttggtggttattttataattgttatttgttactttgtaatattaatatttagtattagggtctgtttgaa-tggtttatttgagct |
11615880 |
T |
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| Q |
215 |
tatttacttacaatacttacataagttcttgttgtgagactgtttggaagaat-----------ttgagaaaacaaggccctgtttggataaataacttc |
303 |
Q |
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| T |
11615879 |
tatt---------tacttacataagtacttgttgtgagactgtttggaagaatttgagaaaacattgagaaaacaaggccctgtttggataaataacttc |
11615789 |
T |
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| Q |
304 |
atctgcagcttaagtat |
320 |
Q |
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| T |
11615788 |
atctgcagcttaagtat |
11615772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 11684560 - 11684520
Alignment:
| Q |
182 |
attagggtctgtttgaattggtttatttgagcttatttact |
222 |
Q |
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| T |
11684560 |
attagggtctgtttagattggtttatttgagcttatctact |
11684520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 36495403 - 36495436
Alignment:
| Q |
184 |
tagggtctgtttgaattggtttatttgagcttat |
217 |
Q |
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| T |
36495403 |
tagggtctgtttggattggtttatttgagcttat |
36495436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 900629 - 900661
Alignment:
| Q |
190 |
ctgtttgaattggtttatttgagcttatttact |
222 |
Q |
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| T |
900629 |
ctgtttgaattggtttatttgagcttatatact |
900661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 18591889 - 18591921
Alignment:
| Q |
185 |
agggtctgtttgaattggtttatttgagcttat |
217 |
Q |
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| T |
18591889 |
agggtctgtttgaattggtttaattgagcttat |
18591921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 36643794 - 36643826
Alignment:
| Q |
189 |
tctgtttgaattggtttatttgagcttatttac |
221 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
36643794 |
tctgtttggattggtttatttgagcttatttac |
36643826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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