View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_high_17 (Length: 282)
Name: NF15146_high_17
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 48656578 - 48656844
Alignment:
| Q |
1 |
tatggattaggaggaggaagaagagcaggaattagactgtgtttaaggactacagaaggcaattgaacatcaatacaaggttctgtttttgaagggaaag |
100 |
Q |
| |
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|||| ||||| |||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48656578 |
tatgtattagaaggatgcagaagaacaggaatttcactgtgtttaaggactacagaaggcaattgaacatcaatacaaggttctgtttttgaagggaaag |
48656677 |
T |
|
| Q |
101 |
gcaccagtttgtggaaatagttatagtaacaagtgaaaacagcactagattcattaaacaaaatagcaaaaggaattttgtgttctgtggctacatcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48656678 |
gcaccagtttgtggaaatagttatagtaacaagtgaaaacagcactagattcattaaacaaaatagcaaaaggaattttgtgttctgtggctacatcaca |
48656777 |
T |
|
| Q |
201 |
aacccatgaaatgaaaatgttgtttatgatgcaagaaattggtgtttttgactcagcatgatttttg |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48656778 |
aacccatgaaatgaaaatgttgtttatgatgcaagaaattggtgtttttgactcagcatgatttttg |
48656844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 48628917 - 48629024
Alignment:
| Q |
42 |
tttaaggactacagaaggcaattgaacatcaatacaaggttctgtttttgaagggaaaggcaccagtttgtggaaatagttatagtaacaagtgaaaaca |
141 |
Q |
| |
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||||||||||| | ||||||| |||||||||||| |||||||||||| |||||| ||||| || |||||||||| ||||||||||||| | ||||||| |
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| T |
48628917 |
tttaaggactataaaaggcaaatgaacatcaatataaggttctgtttctgaaggaaaaggtacaagtttgtggacatagttatagtaagtggcgaaaaca |
48629016 |
T |
|
| Q |
142 |
gcactaga |
149 |
Q |
| |
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|||||||| |
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| T |
48629017 |
gcactaga |
48629024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 48618270 - 48618197
Alignment:
| Q |
56 |
aaggcaattgaacatcaatacaaggttctgtttttgaagggaaaggcaccagtttgtggaaatagttatagtaa |
129 |
Q |
| |
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|||| ||||||||||||||| |||||||||||| |||||||||| | ||||||||||||||||||||||||||| |
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| T |
48618270 |
aaggtaattgaacatcaatataaggttctgtttgtgaagggaaacgtaccagtttgtggaaatagttatagtaa |
48618197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 48653169 - 48653258
Alignment:
| Q |
40 |
tgtttaaggactacagaaggcaattgaacatcaatacaaggttctgtttttgaagggaaaggcaccagtttgtggaaatagttatagtaa |
129 |
Q |
| |
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|||||||| |||||| |||| ||||||||||||||| |||||||| |||||||||||| | |||||||||||||||||||| |||||| |
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| T |
48653169 |
tgtttaagaactacaaaaggtaattgaacatcaatataaggttcttcatttgaagggaaacgtaccagtttgtggaaatagttgtagtaa |
48653258 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 11547282 - 11547369
Alignment:
| Q |
42 |
tttaaggactacagaaggcaattgaacatcaatacaaggttctgtttttgaagggaaaggcaccagtttgtggaaatagttatagtaa |
129 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||| |||||||| ||| |||| ||| | |||||||||| |||||||||||||||| |
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|
| T |
11547282 |
tttaaggacttgaaaaggtaattgaacatcaatataaggttctttttccaaaggaaaatgtaccagtttgttgaaatagttatagtaa |
11547369 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 263
Target Start/End: Original strand, 48667219 - 48667419
Alignment:
| Q |
63 |
ttgaacatcaatacaaggttctgtttttgaagggaaaggcaccagtttgtggaaatagttatagtaacaagtgaaaacagcactagattcattaaacaaa |
162 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| | || |||||||| ||| | |||| || ||||||||||||||||| | | | | || |
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|
| T |
48667219 |
ttgaacatcaatataaggttcttcatttgaagggaaaggtaacaatttgtggacataatcatagcaaatggtgaaaacagcactagaattagtccataac |
48667318 |
T |
|
| Q |
163 |
atagcaaaaggaattttgtgttctgtggctacatcacaaacccatgaaatgaaaatgttgtttatgatgcaagaaattggtgtttttgactcagcatgat |
262 |
Q |
| |
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| |||| ||||||| |||||||| |||| ||||| |||||||| || ||| ||||||||| || || ||||||||| | || || |||||||||| |
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| T |
48667319 |
aaagcagaaggaatattgtgttcaaaagctatatcactaacccatggaaaaaaagggttgtttataatacatgaaattggtttgttcgaatcagcatgat |
48667418 |
T |
|
| Q |
263 |
t |
263 |
Q |
| |
|
| |
|
|
| T |
48667419 |
t |
48667419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 11547430 - 11547503
Alignment:
| Q |
190 |
gctacatcacaaacccatgaaatgaaaatgttgtttatgatgcaagaaattggtgtttttgactcagcatgatt |
263 |
Q |
| |
|
||||||||||||||||| | || ||| ||||||||||| |||||||||||| | ||||||||| ||||||| |
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|
| T |
11547430 |
gctacatcacaaacccaaggaacaaaaggattgtttatgatacaagaaattggtttgtttgactcaacatgatt |
11547503 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 255
Target Start/End: Original strand, 27228218 - 27228431
Alignment:
| Q |
42 |
tttaaggactacagaaggcaattgaacatcaatacaaggttctgtttttgaagggaaaggcaccagtttgtggaaatagttatagtaacaagtgaaaaca |
141 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| ||||||||| || ||||||||| | ||||||||||| ||||||||||||||| | ||||||| |
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|
| T |
27228218 |
tttaaggactagagaagacaattgaacatcaatataaggttctgcattcgaagggaaacgtaccagtttgtgaaaatagttatagtaagctgcgaaaaca |
27228317 |
T |
|
| Q |
142 |
gcactagattcattaaacaaaatagcaaaaggaattttgtgttctgtggctacatcacaaacccatgaaatgaaaatg-ttgtttatgatgcaagaaatt |
240 |
Q |
| |
|
|||| |||| | | | || | |||| ||||||| | | |||| | |||||||||| |||||||| || ||||| | ||||||||||| |||||||| |
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| T |
27228318 |
gcaccggattgaatccataataaagcagaaggaatctcgagttcagcagctacatcactaacccatggaa-gaaaaggattgtttatgatacaagaaatc |
27228416 |
T |
|
| Q |
241 |
ggtgtttttgactca |
255 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
27228417 |
agtgtatttgactca |
27228431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 255
Target Start/End: Original strand, 27224028 - 27224240
Alignment:
| Q |
43 |
ttaaggactacagaaggcaattgaacatcaatacaaggttctgtttttgaagggaaaggcaccagtttgtggaaatagttatagtaacaagtgaaaacag |
142 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| | |||||| ||||||||| | ||||||||||||||||||||||||||| | |||||||| |
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|
| T |
27224028 |
ttaagaactacagaagacaattgaacatcaatatatggttcttcaaccgaagggaaacgtaccagtttgtggaaatagttatagtaagcggcgaaaacag |
27224127 |
T |
|
| Q |
143 |
cactagattcattaaacaaaatagcaaaaggaattttgtgttctgtggctacatcacaaacccatgaaatgaaaatg-ttgtttatgatgcaagaaattg |
241 |
Q |
| |
|
||||||||| | | || | |||| ||||||| | | ||| ||||||||||||||||||| || ||||| | ||||||||||| |||||||| | |
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|
| T |
27224128 |
cactagattgaacccataataaagcagaaggaatctcattttcaacagctacatcacaaacccatggaa-gaaaaggattgtttatgatacaagaaatcg |
27224226 |
T |
|
| Q |
242 |
gtgtttttgactca |
255 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
27224227 |
gtgtatttgactca |
27224240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 255
Target Start/End: Complemental strand, 19665626 - 19665427
Alignment:
| Q |
56 |
aaggcaattgaacatcaatacaaggttctgtttttgaagggaaaggcaccagtttgtggaaatagttatagtaacaagtgaaaacagcactagattcatt |
155 |
Q |
| |
|
|||| |||||| |||||||| |||||||| ||| ||||||||| | ||| ||| || ||||||||||||||| ||||||||||||| | |||| | | |
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|
| T |
19665626 |
aaggtaattgagcatcaatataaggttctttttccgaagggaaacgtaccgttttatgaaaatagttatagtaagcagtgaaaacagcagtggattgaat |
19665527 |
T |
|
| Q |
156 |
aaacaaaatagcaaaaggaattttgtgttctgtggctacatcacaaacccatgaaatgaaaatg-ttgtttatgatgcaagaaattggtgtttttgactc |
254 |
Q |
| |
|
| || | |||| ||||||| | |||| | ||||||||||||||||||| || ||||| | |||||||||||||||||||| ||| | |||||||| |
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|
| T |
19665526 |
ccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccatggaa-gaaaaggattgtttatgatgcaagaaataggtttgtttgactc |
19665428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 44044661 - 44044611
Alignment:
| Q |
77 |
aaggttctgtttttgaagggaaaggcaccagtttgtggaaatagttatagt |
127 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| ||||||||||||| |
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|
| T |
44044661 |
aaggttctgtttctgaagggaaacataccagtttgtgaaaatagttatagt |
44044611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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