View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_high_18 (Length: 269)
Name: NF15146_high_18
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 9895403 - 9895161
Alignment:
| Q |
15 |
atgttaaaaaatggttacctcttttattaaccgtaataataaatcagttataaaaaatatttattgttcacaatttgacatcctagtactttttatcgac |
114 |
Q |
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| T |
9895403 |
atgttaaaaaatggttacctcttttattaaccgtaataataaatcagttataaaaaatatttattgttcacaatttgacatcctagtactttttatcgac |
9895304 |
T |
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| Q |
115 |
aatggtatattagtacttaaaacaatattttgttgatgatatcaccaacactaggaccatctcaatcattaagcaagtaaaactcttgttactaaaattt |
214 |
Q |
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| T |
9895303 |
aatggtatattagtacttaaaacaatattttgttgatgatatcaccaacactaggaccatctcaatcattaagcaagtaaaactcttgttactaaaattt |
9895204 |
T |
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| Q |
215 |
tatacatcaagaaagaccaataatatttgaacaaccctttgct |
257 |
Q |
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| T |
9895203 |
tatacatcaagaaagactaatgatatttgaacaaccatttgct |
9895161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 17112202 - 17112102
Alignment:
| Q |
15 |
atgttaaaaaatggttacctcttttattaaccgtaataataaatcagttataaaaaat-atttattgttcacaatttgacatcctagtactttttatcga |
113 |
Q |
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| T |
17112202 |
atgttaaaaaatggtta--tcttttattaactgtattaacaaagtagttataaataattaattactactcacaatttggcatcctggtactttttattga |
17112105 |
T |
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| Q |
114 |
caa |
116 |
Q |
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||| |
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| T |
17112104 |
caa |
17112102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 47174154 - 47174053
Alignment:
| Q |
17 |
gttaaaaaatggttacctcttttattaaccgtaataataaatcagttataaaaaatatttattgttcacaatttgacatcctagtactttttatcgacaa |
116 |
Q |
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||||||||||||||| || ||||||||| ||| ||| |||| ||||||| ||| ||| | ||||||| ||| |||||| ||||||||||| ||||| |
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| T |
47174154 |
gttaaaaaatggttatct-ttttattaatggtattaacaaattagttatacaaa----ttactattcacaaattggcatcctggtactttttattgacaa |
47174060 |
T |
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| Q |
117 |
tggtata |
123 |
Q |
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||||||| |
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| T |
47174059 |
tggtata |
47174053 |
T |
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