View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15146_high_19 (Length: 269)

Name: NF15146_high_19
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15146_high_19
NF15146_high_19
[»] scaffold0433 (1 HSPs)
scaffold0433 (24-253)||(8084-8313)
[»] chr6 (14 HSPs)
chr6 (24-253)||(17690442-17690671)
chr6 (24-253)||(27297635-27297864)
chr6 (24-253)||(29309866-29310095)
chr6 (24-253)||(29316825-29317054)
chr6 (24-253)||(27380229-27380458)
chr6 (24-253)||(27470612-27470841)
chr6 (24-253)||(17683459-17683689)
chr6 (24-253)||(11652674-11652903)
chr6 (24-189)||(27278407-27278572)
chr6 (24-189)||(27303298-27303463)
chr6 (150-253)||(25536292-25536395)
chr6 (24-213)||(18336605-18336794)
chr6 (49-154)||(28755282-28755386)
chr6 (49-81)||(16393506-16393538)
[»] chr1 (10 HSPs)
chr1 (24-253)||(18253006-18253235)
chr1 (28-253)||(18531519-18531745)
chr1 (24-253)||(27309555-27309783)
chr1 (24-253)||(9075879-9076108)
chr1 (24-253)||(16358035-16358266)
chr1 (80-253)||(27130442-27130615)
chr1 (24-113)||(21169411-21169500)
chr1 (27-185)||(22640856-22641014)
chr1 (172-253)||(36815747-36815828)
chr1 (176-209)||(27276691-27276724)
[»] scaffold0061 (1 HSPs)
scaffold0061 (24-253)||(5198-5427)
[»] scaffold0390 (2 HSPs)
scaffold0390 (24-253)||(5911-6140)
scaffold0390 (24-253)||(12927-13156)
[»] chr4 (25 HSPs)
chr4 (24-253)||(8859168-8859397)
chr4 (23-253)||(18263188-18263418)
chr4 (23-253)||(18270049-18270279)
chr4 (24-253)||(26971441-26971670)
chr4 (24-253)||(869597-869826)
chr4 (24-253)||(19919508-19919737)
chr4 (24-253)||(19925737-19925966)
chr4 (24-253)||(28392144-28392373)
chr4 (24-253)||(55613685-55613913)
chr4 (24-253)||(5714948-5715178)
chr4 (36-253)||(4425629-4425846)
chr4 (24-253)||(5708313-5708542)
chr4 (24-253)||(10620310-10620539)
chr4 (24-253)||(10627392-10627621)
chr4 (24-210)||(26964590-26964776)
chr4 (24-253)||(47387932-47388161)
chr4 (150-253)||(8846179-8846282)
chr4 (152-253)||(5667198-5667299)
chr4 (49-179)||(35224602-35224732)
chr4 (28-155)||(10676570-10676697)
chr4 (28-155)||(10890210-10890337)
chr4 (28-98)||(20579418-20579488)
chr4 (24-86)||(10825329-10825391)
chr4 (100-155)||(10690368-10690423)
chr4 (100-155)||(10904008-10904063)
[»] scaffold0234 (2 HSPs)
scaffold0234 (23-253)||(1320-1550)
scaffold0234 (23-253)||(10213-10443)
[»] chr8 (9 HSPs)
chr8 (24-253)||(22172461-22172690)
chr8 (24-253)||(6095122-6095351)
chr8 (24-253)||(21941641-21941872)
chr8 (24-253)||(15327199-15327428)
chr8 (24-253)||(15507568-15507797)
chr8 (74-253)||(28549023-28549203)
chr8 (24-177)||(24644001-24644153)
chr8 (74-213)||(29230430-29230568)
chr8 (74-210)||(24796039-24796170)
[»] chr7 (13 HSPs)
chr7 (24-253)||(29328764-29328993)
chr7 (24-253)||(11535064-11535293)
chr7 (24-253)||(11541982-11542211)
chr7 (24-253)||(12739518-12739747)
chr7 (24-253)||(12751835-12752064)
chr7 (24-253)||(15153444-15153672)
chr7 (24-253)||(18562009-18562238)
chr7 (24-224)||(2652990-2653190)
chr7 (24-220)||(9978837-9979033)
chr7 (141-253)||(11557192-11557298)
chr7 (182-253)||(24850719-24850790)
chr7 (174-253)||(13393138-13393217)
chr7 (47-101)||(18256843-18256897)
[»] chr3 (25 HSPs)
chr3 (24-253)||(10571568-10571797)
chr3 (24-253)||(10578334-10578563)
chr3 (24-253)||(15341221-15341450)
chr3 (24-253)||(15356588-15356817)
chr3 (24-253)||(15599886-15600115)
chr3 (24-253)||(15606431-15606660)
chr3 (24-253)||(16481460-16481688)
chr3 (24-224)||(6111105-6111305)
chr3 (25-253)||(13517785-13518013)
chr3 (23-253)||(17196749-17196979)
chr3 (24-253)||(18537971-18538200)
chr3 (36-253)||(32056059-32056276)
chr3 (24-253)||(1646498-1646727)
chr3 (24-198)||(13212331-13212505)
chr3 (24-185)||(8491428-8491589)
chr3 (103-253)||(17137355-17137505)
chr3 (27-253)||(23014348-23014574)
chr3 (28-253)||(16201195-16201420)
chr3 (147-253)||(17780243-17780349)
chr3 (147-253)||(19081544-19081650)
chr3 (28-113)||(13258661-13258746)
chr3 (24-105)||(17780165-17780246)
chr3 (24-105)||(19081466-19081547)
chr3 (30-212)||(25801214-25801392)
chr3 (54-118)||(54333200-54333264)
[»] chr2 (5 HSPs)
chr2 (24-253)||(22790835-22791064)
chr2 (24-247)||(41664747-41664970)
chr2 (154-253)||(21329374-21329473)
chr2 (77-253)||(18620811-18620988)
chr2 (49-154)||(27353433-27353538)
[»] chr5 (7 HSPs)
chr5 (24-253)||(24694462-24694689)
chr5 (36-253)||(19713514-19713731)
chr5 (24-253)||(24701231-24701453)
chr5 (24-242)||(18565459-18565681)
chr5 (80-253)||(19706230-19706403)
chr5 (49-213)||(938577-938740)
chr5 (26-105)||(39539653-39539732)
[»] scaffold0220 (1 HSPs)
scaffold0220 (36-253)||(19288-19506)
[»] scaffold1199 (1 HSPs)
scaffold1199 (24-253)||(96-330)
[»] scaffold0063 (1 HSPs)
scaffold0063 (24-253)||(6498-6733)
[»] scaffold0008 (1 HSPs)
scaffold0008 (24-253)||(229389-229622)
[»] scaffold0213 (1 HSPs)
scaffold0213 (24-156)||(4313-4445)
[»] scaffold1303 (1 HSPs)
scaffold1303 (27-171)||(986-1129)
[»] scaffold0026 (1 HSPs)
scaffold0026 (24-166)||(26276-26418)
[»] scaffold0032 (1 HSPs)
scaffold0032 (24-253)||(107249-107479)
[»] scaffold0203 (1 HSPs)
scaffold0203 (24-140)||(29186-29302)
[»] scaffold0502 (1 HSPs)
scaffold0502 (28-213)||(62-247)
[»] scaffold0657 (1 HSPs)
scaffold0657 (24-76)||(3870-3922)
[»] scaffold0039 (1 HSPs)
scaffold0039 (24-112)||(87829-87916)


Alignment Details
Target: scaffold0433 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 8313 - 8084
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8313 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 8214  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8213 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 8114  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    |||||||| |||||||||||||||||||||    
T  8113 tagtaatgtttcaacacaagggttctattt 8084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 17690442 - 17690671
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17690442 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 17690541  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17690542 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 17690641  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  17690642 tagtaatgcttcaacacaagggttctattt 17690671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 27297864 - 27297635
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27297864 gagcagaacctttgtagaagaaatatttctaatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 27297765  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27297764 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 27297665  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  27297664 tagtaatgcttcaacacaagggttctattt 27297635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 29310095 - 29309866
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29310095 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagctatgcctctactcagtccacacgaacagaacttctccgatgaccggt 29309996  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  29309995 gctagccaattccaacggagattcagagataacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaagt 29309896  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  29309895 tagtaatgcttcaacacaagggttctattt 29309866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 29317054 - 29316825
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29317054 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagctatgcctctactcagtccacacgaacagaacttctccgatgaccggt 29316955  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||  ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  29316954 gctagccaattccaacagagattcagagataacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaagt 29316855  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  29316854 tagtaatgcttcaacacaagggttctattt 29316825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 27380229 - 27380458
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27380229 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctctgatgaccggt 27380328  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||    
T  27380329 gctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaggt 27380428  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    || ||||| |||||||||||||||||||||    
T  27380429 taataatgtttcaacacaagggttctattt 27380458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 27470612 - 27470841
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27470612 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctctgatgaccggt 27470711  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||    
T  27470712 gctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaggt 27470811  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    || ||||| |||||||||||||||||||||    
T  27470812 taataatgtttcaacacaagggttctattt 27470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 17683459 - 17683689
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17683459 gagcagaacctttgtagcagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctctgatgaccggt 17683558  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaa-g 222  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||| |    
T  17683559 gctagccaattccaacggagattcaaagagaacaatgtttagagagcggtgactagggtttcacaacttttgtgaattaagttaagcactcacaaaaagg 17683658  T
Q  223 ttagtaatgcttcaacacaagggttctattt 253  Q
    |||||||||||||||||||||||||||||||    
T  17683659 ttagtaatgcttcaacacaagggttctattt 17683689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 11652903 - 11652674
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||    
T  11652903 gagcagaacctttgtagaagaaatatttctgatcacgagtaaagcaaagcagcgatgcctctactcagtccacacaaactgtacttctctgatgaccggt 11652804  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||||||| |||| || ||||||||||||||  |||| |||||||||||||||||||||||||| |||| ||||||||| |    
T  11652803 gctagccaattccaacggagattcagaaagaagaaggtttagagagcggcatctagggtttcacaacttttgtgaattaggttcagcattcacaaaaaat 11652704  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  11652703 tagtaatgcttcaacacaagggttctattt 11652674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 27278572 - 27278407
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27278572 gagcagaacctttgtagaagaaatatttctaatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 27278473  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27278472 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagggtttcacaa 27278407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 27303463 - 27303298
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27303463 gagcagaacctttgtagaagaaatatttctaatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 27303364  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27303363 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagggtttcacaa 27303298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 25536292 - 25536395
Alignment:
Q  150 agagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttct 249  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25536292 agagaacaaggtttagagagcggcggcttgggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttct 25536391  T
Q  250 attt 253  Q
    ||||    
T  25536392 attt 25536395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 18336794 - 18336605
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| | |||| ||||||||||| ||||||||||   ||||||| |||||||||||||||||||||| ||||||||  ||||| |||    
T  18336794 gagcagaacctttgtagcataaatgtttctgatcacaagcaaagcaacatagcgatgtctctactcagtccacacgaacataacttctctaatgactggt 18336695  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcact 213  Q
    ||||||||| | ||||| |||| |||||||||||| |||||||||||||| | ||  ||||||| |||||| |||||||||| |||||||    
T  18336694 gctagccaacttcaacggagatccagagagaacaaggtttagagagcggcagatattgtttcaccacttttatgaattaggtaaagcact 18336605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 28755282 - 28755386
Alignment:
Q  49 tttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattca 148  Q
    |||||||||||||||||| ||||| ||| ||| |||||||||||||||||||| ||||||| ||  |||| |||||||||||||||||||||||| || |    
T  28755282 tttctgatcacgagcaaatcaaagtagcaatgtctctactcagtccacacgaatagaactt-tctaatgatcggtgctagccaattccaacgaaggttga 28755380  T
Q  149 gagaga 154  Q
    ||||||    
T  28755381 gagaga 28755386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 16393506 - 16393538
Alignment:
Q  49 tttctgatcacgagcaaagcaaagcagcgatgc 81  Q
    |||||||||||||||||||||||| ||||||||    
T  16393506 tttctgatcacgagcaaagcaaagtagcgatgc 16393538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 18253235 - 18253006
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18253235 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 18253136  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18253135 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 18253036  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  18253035 tagtaatgcttcaacacaagggttctattt 18253006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 28 - 253
Target Start/End: Original strand, 18531519 - 18531745
Alignment:
Q  28 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgcta 127  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18531519 agaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctacttagtccacacgaacagaacttctccgatgaccggtgcta 18531618  T
Q  128 gccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaa-gttag 226  Q
    ||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |    
T  18531619 gccaattccaacggagattcagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaaggttcg 18531718  T
Q  227 taatgcttcaacacaagggttctattt 253  Q
    |||||||||||||||||||||||||||    
T  18531719 taatgcttcaacacaagggttctattt 18531745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 27309555 - 27309783
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  27309555 gagcaaaacctttgtagaagaaatatttctgatcacgagcaaagcaaagtagcgatgcctctactcagtccacacgaaaagaacctctccgatgaccggt 27309654  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  27309655 gctagccaatttcaacggagattcaaagagaacaaggtttagagagcggcggctagggtttcacaacttttgttaattaggttaagcactcacaaaaagt 27309754  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||| ||||||||||    
T  27309755 tagtaatgcttcaacacaa-ggttctattt 27309783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 9075879 - 9076108
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    |||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| ||||| |||| ||||    
T  9075879 gagcagaatctttgtagaagaattatttctgatcacgagcaaagcaaagcagcgttgcctctactcattccacatgaacagaacgtctcctatgatcggt 9075978  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9075979 gctagccaattccaacggagattcaaagagaacgaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 9076078  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  9076079 tagtaatgcttcaacacaagggttctattt 9076108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 16358035 - 16358266
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacga-gcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccgg 122  Q
    ||||||||||| |||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  16358035 gagcagaacctttgtagaagaaatatttatgatcacgaagaaaagaaaagcagcgatgcctctactcagtccacaagaacagaacttctccgaagaccgg 16358134  T
Q  123 tgctag-ccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaa 221  Q
    || ||| ||||||||||||  |||||| ||||||||| |||||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||    
T  16358135 tgatagaccaattccaacggggattcaaagagaacaacgtttagagagcgacagctatggtttcacaacttttgtgaattaggttaagcactcacaaaaa 16358234  T
Q  222 gttagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||||    
T  16358235 gttagtaatgcttcaacacaagggttctattt 16358266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 80 - 253
Target Start/End: Original strand, 27130442 - 27130615
Alignment:
Q  80 gcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctag 179  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  27130442 gcctctactcagtccacacgaacagaacttctccgaagaccggtgctagccaattccaacggagattcagagagaacaaggtttagagagcggaggctag 27130541  T
Q  180 cgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctattt 253  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27130542 ggtttcacaacttttgtgaattaggttaagcacttacaaaaagttagtaatgcttcaacacaagggttctattt 27130615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 21169411 - 21169500
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctcc 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21169411 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcaacgatgcctctactcagtccacacgaacagaacttctcc 21169500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 22640856 - 22641014
Alignment:
Q  27 cagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgct 126  Q
    |||||||| ||||| |||| | |||||||||||||||||||||| | |||||||||||||||| ||||| |||  |||||||||||  |||||  |||||    
T  22640856 cagaacctttgtagcagaattgtttctgatcacgagcaaagcaacgtagcgatgcctctactctgtccagacgttcagaacttctcttatgactagtgct 22640955  T
Q  127 agccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttc 185  Q
    |||||||||||||  ||||||||||||||    |||| ||||||||||||||| |||||    
T  22640956 agccaattccaacagagattcagagagaatggggttttgagagcggcggctagggtttc 22641014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 36815747 - 36815828
Alignment:
Q  172 gcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctattt 253  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||  || |||||||||||||||||||||||||    
T  36815747 gcggctagggtttcacaacttttgtgaattaggttaagcactcacaagaagtctgtcatgcttcaacacaagggttctattt 36815828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 27276691 - 27276724
Alignment:
Q  176 ctagcgtttcacaacttttgtgaattaggttaag 209  Q
    |||| |||||||||||||||||||||||||||||    
T  27276691 ctagggtttcacaacttttgtgaattaggttaag 27276724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 5198 - 5427
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 5297  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5298 gctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 5397  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  5398 tagtaatgcttcaacacaagggttctattt 5427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 5911 - 6140
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5911 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 6010  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6011 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 6110  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  6111 tagtaatgcttcaacacaagggttctattt 6140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 12927 - 13156
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12927 gagcagaacctttgtagcagaaatctttctcatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 13026  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  13027 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaactgttgtgaattaggttaagcactcacaaaaagt 13126  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  13127 tagtaatgcttcaacacaagggttctattt 13156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 8859397 - 8859168
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8859397 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 8859298  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8859297 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 8859198  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  8859197 tagtaatgcttcaacacaagggttctattt 8859168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 18263418 - 18263188
Alignment:
Q  23 cgagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccgg 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18263418 cgagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttatccgatgaccgg 18263319  T
Q  123 tgctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaag 222  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18263318 tgctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaag 18263219  T
Q  223 ttagtaatgcttcaacacaagggttctattt 253  Q
    ||||| ||| |||||||||||||||||||||    
T  18263218 ttagtcatgtttcaacacaagggttctattt 18263188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 18270279 - 18270049
Alignment:
Q  23 cgagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccgg 122  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18270279 cgagcagaacctttatagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccgg 18270180  T
Q  123 tgctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaag 222  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18270179 tgctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaag 18270080  T
Q  223 ttagtaatgcttcaacacaagggttctattt 253  Q
    ||||| ||| |||||||||||||||||||||    
T  18270079 ttagtcatgtttcaacacaagggttctattt 18270049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 26971670 - 26971441
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26971670 gagcagaacctttgtagcataaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 26971571  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26971570 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 26971471  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    |||||||| |||||||||||||||||||||    
T  26971470 tagtaatgtttcaacacaagggttctattt 26971441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 869826 - 869597
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  869826 gagcagaacatttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 869727  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  869726 gctagccaattccaacggagattcagagagaactatgtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggt 869627  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    |||||||| |||||||||||||||||||||    
T  869626 tagtaatgtttcaacacaagggttctattt 869597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 19919508 - 19919737
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19919508 gagcacaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 19919607  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||| ||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  19919608 gctagccaatttcaacggagattcagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagg 19919707  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  19919708 tagtaatgcttcaacacaagggttctattt 19919737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 19925737 - 19925966
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19925737 gagcacaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcaatgcctctactcagtccacacgaacagaacttctccgatgaccggt 19925836  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  19925837 gctagccaattccaacggagattcagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagg 19925936  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  19925937 tagtaatgcttcaacacaagggttctattt 19925966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 28392144 - 28392373
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  28392144 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagtacttctccgatgactggt 28392243  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| |||||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28392244 gctagccaattccaacggagattcagagagaagaaggtttaaagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 28392343  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  28392344 tagtaatgcttcaacacaagggttctattt 28392373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 55613913 - 55613685
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  55613913 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgactggt 55613814  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  55613813 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggct-gagtttcacaacttttgtgaattaggttaagcactcacaaaaagt 55613715  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
     |||||||||||||||||||||||||||||    
T  55613714 aagtaatgcttcaacacaagggttctattt 55613685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 5715178 - 5714948
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5715178 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccagt 5715079  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactc-acaaaaag 222  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |    
T  5715078 gctagccaattccaacggagattcagagagaactacgtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaacaaaagg 5714979  T
Q  223 ttagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||| |||||||||||||||||||||    
T  5714978 ttagtaatgtttcaacacaagggttctattt 5714948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 36 - 253
Target Start/End: Original strand, 4425629 - 4425846
Alignment:
Q  36 tgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattc 135  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4425629 tgtagaagaaatatttctaatcacgagcaaagcaaagcagcgatgcctctacttagtccacacgaacagaacttctccgatgaccggtgctagccaattc 4425728  T
Q  136 caacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttc 235  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4425729 caacggagattcaaagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcacttacaaaaagttagtaatgcttc 4425828  T
Q  236 aacacaagggttctattt 253  Q
    ||||||||||||||||||    
T  4425829 aacacaagggttctattt 4425846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 5708542 - 5708313
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    |||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5708542 gagcagaatctttgtataagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 5708443  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  5708442 gctagccaattccaacggagattcagagagaactacgtttagagagcagcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggt 5708343  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    |||||||| |||||||||||||||||||||    
T  5708342 tagtaatgtttcaacacaagggttctattt 5708313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 10620310 - 10620539
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10620310 gagcagaacctctgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctattcagtccacacgaacagaacttctccgatgaccggt 10620409  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  10620410 gctagccaattccaacagagattcagagagaacaaggtttagagagcgacggctagggtttcacaacttttgtgaattaggtcaagcactcacaaaaagt 10620509  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
     |||||||||||||||||||||||||||||    
T  10620510 cagtaatgcttcaacacaagggttctattt 10620539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 10627392 - 10627621
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10627392 gagcagaacctctgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctattcagtccacacgaacagaacttctccgatgaccggt 10627491  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  10627492 gctagccaattccaatggagattcagagagaacaaggtttagagagcgacggctagggtttcacaacttttgtgaattaggtcaagcactcacaaaaagt 10627591  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
     |||||||||||||||||||||||||||||    
T  10627592 cagtaatgcttcaacacaagggttctattt 10627621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 26964776 - 26964590
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26964776 gagcagaacctttgtagcataaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 26964677  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagc 210  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26964676 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagc 26964590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 47387932 - 47388161
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| | || | ||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47387932 gagcagaacctttgtagcataattgtttctgatcacgagcaaagcaacatagcgatgcctctacttagtccacacgaacagaacttctccgatgaccggt 47388031  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| |||||||| ||||| || |||||||||| ||||||||| |||||||  ||||||||||||||||||||||||||  ||||||    
T  47388032 gctagccaattccaacggagattcagtgagaaaaaggtttagagagtggcggctagggtttcacgccttttgtgaattaggttaagcactcaacaaaagt 47388131  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
     ||||||| |||| ||||| ||||||||||    
T  47388132 cagtaatgtttcagcacaatggttctattt 47388161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 8846282 - 8846179
Alignment:
Q  150 agagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttct 249  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8846282 agagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaatacaagggttct 8846183  T
Q  250 attt 253  Q
    ||||    
T  8846182 attt 8846179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 5667198 - 5667299
Alignment:
Q  152 agaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctat 251  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |  ||||||||||| ||||||||||||||    
T  5667198 agaacaaggtttagagagcggcggctagggtttcacaacttttgtgaataaggttaagcactcacaaaaaatatgtaatgcttcagcacaagggttctat 5667297  T
Q  252 tt 253  Q
    ||    
T  5667298 tt 5667299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 179
Target Start/End: Complemental strand, 35224732 - 35224602
Alignment:
Q  49 tttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattca 148  Q
    ||||||||||||||||||||||   | |||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||| | |||||    
T  35224732 tttctgatcacgagcaaagcaagatatcgatgcctctactcagtccacacgaacagagcttcttcgatgacccgtgctagtcaattccaacggatattca 35224633  T
Q  149 gagagaacaaagtttagagagcggcggctag 179  Q
    || |||| |  |||||||||| |||||||||    
T  35224632 gaaagaatagggtttagagagaggcggctag 35224602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 10676570 - 10676697
Alignment:
Q  28 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgcta 127  Q
    ||||||| ||||| | || | ||||||||||||||||||| || | ||||||||||||| | ||||||||| |||||||||||||||||||||||| |||    
T  10676570 agaacctttgtagcataattgtttctgatcacgagcaaagtaacgtagcgatgcctctatttagtccacacaaacagaacttctccgatgaccggttcta 10676669  T
Q  128 gccaattccaacgaagattcagagagaa 155  Q
    |||||| |||||  ||||||||||||||    
T  10676670 gccaataccaacagagattcagagagaa 10676697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 10890210 - 10890337
Alignment:
Q  28 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgcta 127  Q
    ||||||| ||||| | || | ||||||||||||||||||| || | ||||||||||||| | ||||||||| |||||||||||||||||||||||| |||    
T  10890210 agaacctttgtagcataattgtttctgatcacgagcaaagtaacgtagcgatgcctctatttagtccacacaaacagaacttctccgatgaccggttcta 10890309  T
Q  128 gccaattccaacgaagattcagagagaa 155  Q
    |||||| |||||  ||||||||||||||    
T  10890310 gccaataccaacagagattcagagagaa 10890337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 20579418 - 20579488
Alignment:
Q  28 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacac 98  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20579418 agaacctttgtagaagaaataattctgatcacgagcaaagcaaagcagcgatgcctctattcagtccacac 20579488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 10825329 - 10825391
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctcta 86  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  10825329 gagcagaacctctgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctcta 10825391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 10690423 - 10690368
Alignment:
Q  100 aacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaa 155  Q
    |||||||||||||||||||||| ||||||||||| |||||  ||||||||||||||    
T  10690423 aacagaacttctccgatgaccgatgctagccaataccaacagagattcagagagaa 10690368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 10904063 - 10904008
Alignment:
Q  100 aacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaa 155  Q
    |||||||||||||||||||||| ||||||||||| |||||  ||||||||||||||    
T  10904063 aacagaacttctccgatgaccgatgctagccaataccaacagagattcagagagaa 10904008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 1320 - 1550
Alignment:
Q  23 cgagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccgg 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1320 cgagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccgg 1419  T
Q  123 tgctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaag 222  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1420 tgctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaag 1519  T
Q  223 ttagtaatgcttcaacacaagggttctattt 253  Q
    ||||| ||| |||||||||||||||||||||    
T  1520 ttagtcatgtttcaacacaagggttctattt 1550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 10213 - 10443
Alignment:
Q  23 cgagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccgg 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10213 cgagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccgg 10312  T
Q  123 tgctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaag 222  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10313 tgctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaag 10412  T
Q  223 ttagtaatgcttcaacacaagggttctattt 253  Q
    ||||| ||| |||||||||||||||||||||    
T  10413 ttagtcatgtttcaacacaagggttctattt 10443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 22172690 - 22172461
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22172690 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccagt 22172591  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |    
T  22172590 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaagat 22172491  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  22172490 tagtaatgcttcaacacaagggttctattt 22172461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 6095351 - 6095122
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6095351 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaaacagcgatgcctctactcagtccacacgaacaaaacttctccgatgaccggt 6095252  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6095251 gctagccaattccaatgaagattcagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 6095152  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  6095151 tagtaatgcttcaacacaagggttctattt 6095122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 21941872 - 21941641
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21941872 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccagt 21941773  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaa-- 221  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||      
T  21941772 gctagctaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagg 21941673  T
Q  222 gttagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||||    
T  21941672 gttagtaatgcttcaacacaagggttctattt 21941641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 15327428 - 15327199
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  15327428 gagctgaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacatgaacataaattctccgatgaccggt 15327329  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||||| |||||||||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  15327328 gctagccaattccaacggagattcaaagagaacaagttttagagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggt 15327229  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||| ||||||||||    
T  15327228 tagtaatgcttcaacacaaaggttctattt 15327199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 15507797 - 15507568
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  15507797 gagctgaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacatgaacataaattctccgatgaccggt 15507698  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||||| |||||||||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  15507697 gctagccaattccaacggagattcaaagagaacaagttttagagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggt 15507598  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||| ||||||||||    
T  15507597 tagtaatgcttcaacacaaaggttctattt 15507568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 74 - 253
Target Start/End: Complemental strand, 28549203 - 28549023
Alignment:
Q  74 agcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaagtttagagagcggc 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| | ||||||||||||||    
T  28549203 agcgatgcctctactcagtccacacgaacagaacttctccgatgaccagtgctagccaattccaacagagattcagagagaaccaggtttagagagcggc 28549104  T
Q  174 ggctagcgtttcacaac-ttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctattt 253  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  28549103 ggctagggtttcacaactttttgtgaattaggttaagcactcacaaaatgttagtcatgcttcaacacaagggttctattt 28549023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 24644153 - 24644001
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24644153 gagcagaacctttgtataacaaatatttctgatcacgagcaaagcagagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccgat 24644054  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggct 177  Q
    ||||||||||| ||||| |||||||||||| || | ||||||||||| ||||||    
T  24644053 gctagccaattacaacggagattcagagag-actaggtttagagagcagcggct 24644001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 29230568 - 29230430
Alignment:
Q  74 agcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaagtttagagagcggc 173  Q
    ||||||||||||||| |||||||||||| |||||||||| ||| || | | |||||||||||||||| ||||| ||||||||||| |||||  |||||||    
T  29230568 agcgatgcctctacttagtccacacgaaaagaacttctctgataacag-tactagccaattccaacggagattaagagagaacaaggtttaaggagcggc 29230470  T
Q  174 ggctagcgtttcacaacttttgtgaattaggttaagcact 213  Q
    |||||| |||||||||||||||| | ||||||||||||||    
T  29230469 ggctagggtttcacaacttttgttagttaggttaagcact 29230430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 24796039 - 24796170
Alignment:
Q  74 agcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaagtttagagagcggc 173  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| || || | | ||||||||||||    
T  24796039 agcgatgcctctactgagtccac-cgaacagaacttctccgatgaccggtgctagctaatttcaacgaagattcagaaag-actaggattagagagcggc 24796136  T
Q  174 ggctagcgtttcacaacttttgtgaattaggttaagc 210  Q
    | |||| |||| | ||| |||||||||||||||||||    
T  24796137 gtctag-gttt-ataac-tttgtgaattaggttaagc 24796170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 29328993 - 29328764
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||    
T  29328993 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagttcacacgaacataacttctctgatgaccggt 29328894  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29328893 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 29328794  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  29328793 tagtaatgcttcaacacaagggttctattt 29328764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 11535064 - 11535293
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  11535064 gagcagaacctttgtagtagaaatctttctgatcacgagcaaagcaaagcagcgatgtctctactcagtccacacgaacagaacttctccgatgatcggt 11535163  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  11535164 gctagccaattccaacgaagattaagagagaacaaggtttagagagcggtggctagggtttcacaacttttgtgaattaggttaagcactaacaaaaagt 11535263  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  11535264 tagtaatgcttcaacacaagggttctattt 11535293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 11541982 - 11542211
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||    
T  11541982 gagcagaacctttgtagtagaaatctttctgatcacgagcaaagcaaagcagcgatacctctactcagtccacacgaacagaacttctccggtgatcggt 11542081  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11542082 gctagccaattccaacgaagattaagagagaacaaggtttagagaacggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 11542181  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  11542182 tagtaatgcttcaacacaagggttctattt 11542211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 12739747 - 12739518
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  12739747 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacaaaaacagaacttctccgatgaccggt 12739648  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  12739647 gctagccaattccaacggagattaagagagaacaaggtttagagagcggcggctacggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 12739548  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    |||||||||| ||| |||| ||||||||||    
T  12739547 tagtaatgctacaaaacaaaggttctattt 12739518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 12752064 - 12751835
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12752064 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactccgtccacacgaacagaacttctccgatgaccggt 12751965  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||||||    
T  12751964 gctagccaattccaacggagatttagagagaacaaggtttagagagcggcggctacggtttcacaacttttgtaaatgaggttaagcactcacaaaaagt 12751865  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||| ||||| ||||    
T  12751864 tagtaatgcttcaacacaatggttccattt 12751835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 15153672 - 15153444
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15153672 gagcagaacctttgtagaa-aaatatttctgatcacgagcaaagcaaagaagcgatgcctctactcagtccacacgaacaaaacttctccgatgaccggt 15153574  T
Q  124 gctagccaattccaacgaagattcagagagaacaaa-gtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaag 222  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  15153573 gctagccaattccaacggagattcagagagaacaaatgtttagagagcggcggctag-gtttcacaacttttgtgaatgaggtttagcactcacaaaaag 15153475  T
Q  223 ttagtaatgcttcaacacaagggttctattt 253  Q
    || ||||||||||||||||||||||||||||    
T  15153474 tttgtaatgcttcaacacaagggttctattt 15153444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 18562238 - 18562009
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||| ||||| ||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  18562238 gagcagaacctttgtagtagaattatttttgatcacgagcaaagcaaaacagcgatgcctctacttagtctacacgaacataacttctccgatgaccggt 18562139  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  18562138 gctagccaattccaacggagattcagagagaagaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggtttagcactcacaaaaagt 18562039  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||| ||||||||||||||||||||||    
T  18562038 tagtaatacttcaacacaagggttctattt 18562009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 2652990 - 2653190
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2652990 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgactggt 2653089  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||  ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  2653090 gctagccaattccaacagagaatcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcataaaaagt 2653189  T
Q  224 t 224  Q
    |    
T  2653190 t 2653190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 9979033 - 9978837
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||| | |||||||||||    
T  9979033 gagcagaacctttgtagtagaactatttctgatcacgagcaaagcaaaatagcgatgcctctacttagtccacacgaacagaactttttcgatgaccggt 9978934  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaa 220  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  9978933 gctagccaattccaacgaagattcagagagaagaaggtttagagagcggcggctagggtttcacaacttttgcgaattaggttaagcactcacaaaa 9978837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 11557192 - 11557298
Alignment:
Q  141 aagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacac 240  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||      | ||||||||||     
T  11557192 aagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcaccaaaa------agtgcttcaacat 11557285  T
Q  241 aagggttctattt 253  Q
    |||||||||||||    
T  11557286 aagggttctattt 11557298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 24850719 - 24850790
Alignment:
Q  182 tttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||    
T  24850719 tttcacaacttttgtgaattaggttaagcactcccaaaaagttcgtaatgcttcaacataagggttctattt 24850790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 13393217 - 13393138
Alignment:
Q  174 ggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctattt 253  Q
    |||||| |||||||||||||||| ||||||||||||   ||||||||| |  |||||| |||| ||||||||||||||||    
T  13393217 ggctagggtttcacaacttttgtaaattaggttaagtgttcacaaaaactatgtaatgtttcagcacaagggttctattt 13393138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 18256843 - 18256897
Alignment:
Q  47 tatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaa 101  Q
    |||||||||||||||||||||||| | |||||| ||| |||| ||||||||||||    
T  18256843 tatttctgatcacgagcaaagcaacgtagcgatacctatacttagtccacacgaa 18256897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 10571568 - 10571797
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10571568 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 10571667  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10571668 gctagtcaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 10571767  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  10571768 tagtaatgcttcaacacaagggttctattt 10571797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 10578334 - 10578563
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10578334 gagcagaacctttgtagcagaaatttttctgatcacgagcaaaacaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 10578433  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10578434 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 10578533  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  10578534 tagtaatgcttcaacacaagggttctattt 10578563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 15341221 - 15341450
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  15341221 gagcagaacctttgtagaaaaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacatgaacagaacttctccgatgatcggt 15341320  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15341321 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 15341420  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  15341421 tagtaatgcttcaacacaagggttctattt 15341450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 15356588 - 15356817
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15356588 gagcagaacctttgtagaaaaaatatttctgatcatgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgatcggt 15356687  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15356688 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 15356787  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  15356788 tagtaatgcttcaacacaagggttctattt 15356817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 15599886 - 15600115
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15599886 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 15599985  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15599986 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 15600085  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    |||||||| |||||||||||||||||||||    
T  15600086 tagtaatgtttcaacacaagggttctattt 15600115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 15606431 - 15606660
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15606431 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttcttcgatgaccggt 15606530  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15606531 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 15606630  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    |||||||| |||||||||||||||||||||    
T  15606631 tagtaatgtttcaacacaagggttctattt 15606660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 16481460 - 16481688
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16481460 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgactggt 16481559  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  16481560 gctagccaattccaacgaagattcagagagaacaaggtttagagagcggcggct-gagtttcacaacttttgtgaattaggttaagcactcacaaaaagt 16481658  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
     |||||||||||||||||||||||||||||    
T  16481659 aagtaatgcttcaacacaagggttctattt 16481688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 6111305 - 6111105
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6111305 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 6111206  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6111205 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 6111106  T
Q  224 t 224  Q
    |    
T  6111105 t 6111105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 253
Target Start/End: Complemental strand, 13518013 - 13517785
Alignment:
Q  25 agcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtg 124  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  13518013 agcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacataacttctctgatgaccggtg 13517914  T
Q  125 ctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagtt 224  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||  |||||    
T  13517913 ctagccaattccaacggagattcaaagagaacaatgtttagagagcggcggctagggtttcacaacttttgtgaattaggtttagcactcacattaagtt 13517814  T
Q  225 agtaatgcttcaacacaagggttctattt 253  Q
    ||| |||||||||||||||||||||||||    
T  13517813 agtcatgcttcaacacaagggttctattt 13517785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 17196749 - 17196979
Alignment:
Q  23 cgagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccgg 122  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  17196749 cgagcagaacctttgtagaagaaatatttctgatcacgagtaaagcaaaacagtgatgcttctactcagtccacacgaacagaacttctccgatgaccgg 17196848  T
Q  123 tgctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaag 222  Q
    |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||  ||||||||    
T  17196849 tgctagccaattccaacggagattcaaagagaacaaggtttagagagcggcggctagggtttcacaacttttgtgaattaagttaagcacaaacaaaaag 17196948  T
Q  223 ttagtaatgcttcaacacaagggttctattt 253  Q
    |||||||||||||||||||||||||||||||    
T  17196949 ttagtaatgcttcaacacaagggttctattt 17196979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 18538200 - 18537971
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18538200 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 18538101  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    |||||||||||| |||| ||||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  18538100 gctagccaattcaaacggagattcagagagaccaaggtttagagagcgacggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaggt 18538001  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    |  |||||||||| |||||| |||||||||    
T  18538000 tcataatgcttcagcacaagagttctattt 18537971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 253
Target Start/End: Original strand, 32056059 - 32056276
Alignment:
Q  36 tgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattc 135  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||     
T  32056059 tgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcggtccacacgaacagaacttctctgatgaccggtgctagccaattt 32056158  T
Q  136 caacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttc 235  Q
    ||||| | ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  32056159 caacggaaattcagagagaacaaggtttagagagcggcggctagggcttcacaacttttgtgaattaggttaagcaatcacaaaaagttagtaatgcttg 32056258  T
Q  236 aacacaagggttctattt 253  Q
    ||||||||||||||||||    
T  32056259 aacacaagggttctattt 32056276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 1646498 - 1646727
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  1646498 gagcagaacctttgtagaataaatatttctaatcacgagcaaagcaaagtagcgatacctctacttagtccacacgaacagaacttctccgatgaccggt 1646597  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    || ||||||||| |||| ||||||| ||||||||| |||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||||| |    
T  1646598 gcaagccaattctaacggagattcaaagagaacaaggtttagagagcgacgactagggtttcacaacttttgttaattaggttaagcactcacaaaaaat 1646697  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  1646698 tagtaatgcttcaacacaagggttctattt 1646727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 13212505 - 13212331
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13212505 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacaaaacttctccgatgaccggt 13212406  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13212405 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtga 13212331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 8491589 - 8491428
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8491589 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgatcggt 8491490  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttc 185  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||    
T  8491489 gctagccaattccaacggagattcagagagaacaaggtttagagagcggcggctagggtttc 8491428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 103 - 253
Target Start/End: Complemental strand, 17137505 - 17137355
Alignment:
Q  103 agaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaatta 202  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |||  |||| |||||||||||||||| |||||    
T  17137505 agaacttctccgatgactggtgctagccaattccaacggagattcaaagagaacaaagtttagagagaggcaactagtgtttcacaacttttgttaatta 17137406  T
Q  203 ggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctattt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17137405 ggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctattt 17137355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 23014348 - 23014574
Alignment:
Q  27 cagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgct 126  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||     
T  23014348 cagaacctttgtataagaaatatttatgatcacgagcaaagcaaagcggcgatgtctctactcagtccacacgaacagaacttctccgatgatcggtgca 23014447  T
Q  127 agccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaag-cactca--caaaaagt 223  Q
    |||||||||||||  |||||||||||| || | |||||||||||||||||||| |||||  |||||||  |||||||||||||    |||  ||||||||    
T  23014448 agccaattccaacagagattcagagag-actaggtttagagagcggcggctagggtttc-taactttt-agaattaggttaagtgtttcaaccaaaaagt 23014544  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    || |||||||||| ||||||||||||||||    
T  23014545 tactaatgcttcagcacaagggttctattt 23014574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 16201420 - 16201195
Alignment:
Q  28 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgcta 127  Q
    ||||||| ||||| | |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |    
T  16201420 agaacctttgtagcataaatgtttctgatcacgagaaaagcaaagcagtgatgcctctactcagtccacacgaacagaacttatccgatgaccagtgcaa 16201321  T
Q  128 gccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcac-tcacaaaaagttag 226  Q
    ||||||||||||  | ||| |||| | || |  ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||  ||||||       
T  16201320 gccaattccaacagaaatttagagcg-actagctttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcacttcaacaaaagtcta 16201222  T
Q  227 taatgcttcaacacaagggttctattt 253  Q
    |||| ||||| ||||||||||| ||||    
T  16201221 taatacttcagcacaagggttcaattt 16201195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 17780243 - 17780349
Alignment:
Q  147 cagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 246  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17780243 cagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 17780342  T
Q  247 tctattt 253  Q
    |||||||    
T  17780343 tctattt 17780349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 19081544 - 19081650
Alignment:
Q  147 cagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 246  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19081544 cagagagaacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggt 19081643  T
Q  247 tctattt 253  Q
    |||||||    
T  19081644 tctattt 19081650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 13258746 - 13258661
Alignment:
Q  28 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctcc 113  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13258746 agaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacaaaacttctcc 13258661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 17780165 - 17780246
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacaga 105  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17780165 gagcagaacctttgtagaagaaatatttctgatcacgagcaaaccaaagcagcgatgcctctactcagtccacacgaacaga 17780246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 19081466 - 19081547
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacaga 105  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19081466 gagcagaacctttgtagaagaaatatttctgatcacgagcaaaccaaagcagcgatgcctctactcagtccacacgaacaga 19081547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 25801392 - 25801214
Alignment:
Q  30 aacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagc 129  Q
    ||||| ||||| |||| | |||||||| ||||||||||||| | ||||| |||||||| ||||||||||||||| ||||| |||| |||  ||||||||     
T  25801392 aacctttgtagcagaattgtttctgattacgagcaaagcaatgtagcgacgcctctacccagtccacacgaacataacttatccggtga-tggtgctagg 25801294  T
Q  130 caattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcac 212  Q
    ||||| ||||| |||||||||||||| |  ||||||||||| ||| |||| |||||  |||||||  ||||||||||||||||    
T  25801293 caatttcaacggagattcagagagaatagggtttagagagcagcgactag-gtttc-taactttt-agaattaggttaagcac 25801214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 54333200 - 54333264
Alignment:
Q  54 gatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatga 118  Q
    ||||||||||||| ||||| | ||||| |||||||||||| ||||||||||| |||||| |||||    
T  54333200 gatcacgagcaaaacaaagtaacgatgtctctactcagtctacacgaacagaccttctctgatga 54333264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 22790835 - 22791064
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22790835 gagcagaacctttgtagaagaaatatttctgatgacgagcaaagcaaagaagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 22790934  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22790935 gctagccaattcccacggagattcaaagagaacaaagtatagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagt 22791034  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    |||||||||| ||| |||||||||||||||    
T  22791035 tagtaatgctacaaaacaagggttctattt 22791064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 41664970 - 41664747
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||| | ||||| |||| | |||||||||||||||| ||||| | |||||||| |||||| ||||||||||||||||| ||| ||||||| ||||    
T  41664970 gagcagaacatttgtagtagaattgtttctgatcacgagcatagcaacgtagcgatgcttctacttagtccacacgaacagaa-ttccccgatgatcggt 41664872  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactc-acaaaaag 222  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||    || ||| |||     
T  41664871 gctagccaattccaacggagattcggagagaacaaggtttagagaacgacggctagggtttcacaacttttgtgaattaggttaaatgttcaacataaat 41664772  T
Q  223 ttagtaatgcttcaacacaagggtt 247  Q
    ||| |||||||||||||||||||||    
T  41664771 ttaataatgcttcaacacaagggtt 41664747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 21329374 - 21329473
Alignment:
Q  154 aacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctattt 253  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21329374 aacaaagtttagagagcggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgtttcaacacaagggttctattt 21329473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 77 - 253
Target Start/End: Complemental strand, 18620988 - 18620811
Alignment:
Q  77 gatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggc 176  Q
    |||| ||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||  ||||||||| |||||||||||||||||| |||  |    
T  18620988 gatgtctccactcagtccacacgaacagaatttctccgatgactggtgctagccaattccaacagagattcagatagaacaaagtttagagagtggcaac 18620889  T
Q  177 tagcgtttcacaacttttgtgaattaggttaagcactc-acaaaaagttagtaatgcttcaacacaagggttctattt 253  Q
    |||  ||||||||||| | ||||||||||||||   || ||||||||| |||||||||| | ||||||||||||||||    
T  18620888 taggatttcacaacttctttgaattaggttaagtgttcaacaaaaagtcagtaatgctttagcacaagggttctattt 18620811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 27353538 - 27353433
Alignment:
Q  49 tttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattca 148  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||| | |||||||||| |||||||||| | ||||||||||| || |||||||    
T  27353538 tttctgatcacgagcaaagcaacgtagcgatgcctctactcagtccacacgtagagaacttctctgatgaccggtacgagccaattccagcggagattca 27353439  T
Q  149 gagaga 154  Q
    ||||||    
T  27353438 gagaga 27353433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 24694462 - 24694689
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694462 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 24694561  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||  | ||||||||    
T  24694562 gctagccaattccaacggagattcagagagaacgaggtttagagaacggcggctagggtttcacaacttttgtgaattaggttaagca--cccaaaaagt 24694659  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  24694660 tagtaatgcttcaacacaagggttctattt 24694689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 36 - 253
Target Start/End: Original strand, 19713514 - 19713731
Alignment:
Q  36 tgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattc 135  Q
    ||||| |||| ||||||||||||||||||||||||| || ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||    
T  19713514 tgtagtagaattatttctgatcacgagcaaagcaaaacaacgatgcctctacttagtccacatgaacagaacttctccgatgactggtgctagccaattc 19713613  T
Q  136 caacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttc 235  Q
    ||||| |||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  19713614 caacggagattcagagagaaaaaggtttagagagcggcagctagggtttcacaacttttgtgaattaggttaagcactcactaaaagttagttatgcttc 19713713  T
Q  236 aacacaagggttctattt 253  Q
    ||||||||||||||||||    
T  19713714 aacacaagggttctattt 19713731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 24701231 - 24701453
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| ||||||||||||||||     |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24701231 gagcagaacctttgtagcagaaatctttctgatcacgagca-----aagcagcgatgcctctactcagtccacacgaatagaacttctccgatgaccggt 24701325  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcacaaaaagt 223  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||  | ||||||||    
T  24701326 gctagccaattccaacggagattcagagagaacgaggtttagagaacggcggctagggtttcacaacttttgtgaattaggttaagca--cccaaaaagt 24701423  T
Q  224 tagtaatgcttcaacacaagggttctattt 253  Q
    ||||||||||||||||||||||||||||||    
T  24701424 tagtaatgcttcaacacaagggttctattt 24701453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 18565459 - 18565681
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcga--tgcctctactcagtccacacgaacagaacttctccgatg--ac 119  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||| |||||||| ||||  ||    
T  18565459 gagcagaacctttgtagaa-aaatatttctgatcacgagcaaagcaaagcagcgagatgcctctactcagtccacacaaacaaaacttctctgatgtgac 18565557  T
Q  120 cggtgctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactcac-aa 218  Q
    ||||||||||||||||||||| ||||||| | ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  18565558 cggtgctagccaattccaacggagattcaaatagaacaaggtttagagaccggcggctagggtttcacaacttttgtgaattaggttaagcactcacaaa 18565657  T
Q  219 aaagttagtaatgcttcaacacaa 242  Q
    |||||| |||||||||||||||||    
T  18565658 aaagtttgtaatgcttcaacacaa 18565681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 80 - 253
Target Start/End: Original strand, 19706230 - 19706403
Alignment:
Q  80 gcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctag 179  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||  | ||| |||||||| || ||||||||||||||||||||    
T  19706230 gcctctacttagtccacacgaacataacttctccgatgaccggtgctagccaatttcaacagatatttagagagaagaaggtttagagagcggcggctag 19706329  T
Q  180 cgtttcacaacttttgtgaattaggttaagcactcacaaaaagttagtaatgcttcaacacaagggttctattt 253  Q
     |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  19706330 ggtttcacaacttttgtgaattaggttaagcactcactaaaagttagttatgcttcaacataagggttctattt 19706403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 938577 - 938740
Alignment:
Q  49 tttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctcc---gatgaccggtgctagccaattccaacgaagat 145  Q
    |||| |||||| | |||| ||| | |||||||| |||||||| |||||||||||||||||||| |   ||||||||||||||||| ||||||||| ||||    
T  938577 tttccgatcacaaacaaaacaacgtagcgatgcttctactcaatccacacgaacagaacttctacgatgatgaccggtgctagccgattccaacggagat 938676  T
Q  146 tcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcact 213  Q
    | |||||||| || |||||||||||||||||||| |||| | ||| ||||||||||||||| ||||||    
T  938677 t-agagagaataaggtttagagagcggcggctag-gttt-ataac-tttgtgaattaggtttagcact 938740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 39539732 - 39539653
Alignment:
Q  26 gcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacaga 105  Q
    ||||||||| ||||| ||||   ||||||||||| |||||||||| | ||||||| ||||||||||||||||| ||||||    
T  39539732 gcagaacctttgtagcagaatagtttctgatcacaagcaaagcaacgtagcgatgtctctactcagtccacacaaacaga 39539653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 36 - 253
Target Start/End: Complemental strand, 19506 - 19288
Alignment:
Q  36 tgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgctagccaattc 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  19506 tgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacatgaacagaacttctccgatgaccggtgctagccaatta 19407  T
Q  136 caacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcac-tcacaaaaagttagtaatgctt 234  Q
    ||||| ||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  19406 caacggagattcagagagaactacgtttagagagtggcggctagggtttcacaacttttgtgaattaggttaagcacttcacaaaaagttagtaatgttt 19307  T
Q  235 caacacaagggttctattt 253  Q
    |||||||||||||||||||    
T  19306 caacacaagggttctattt 19288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1199 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold1199
Description:

Target: scaffold1199; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 330 - 96
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  330 gagcagaacctttgtagaagaaatatttctgatcacaagcaaagcaaagcagcgatgtctctactcagtccacacgaacagaacttctccgatgaccggt 231  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactca-----caa 218  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||||||||||     |||    
T  230 gctagccaattccaacggagattcagagagaacaaggtttagatagcggcggctatggtttcacaacttttgtgaattaggttaagcactcacttttcaa 131  T
Q  219 aaagttagtaatgcttcaacacaagggttctattt 253  Q
    ||||||  |||||||||||||||||||||||||||    
T  130 aaagttcataatgcttcaacacaagggttctattt 96  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 6733 - 6498
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||| |||||| ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  6733 gagcagaacctttgtagtagaattatttcagatcacgagcaaagcaaaatagcgatgcctctacttagtccacacgaacagaacttctccgatgactggt 6634  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcact------caca 217  Q
    ||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||       | |    
T  6633 gctagccaattccaatggagattcaaagagaacaaggtttagagagcggcggctagggtttcaccacttttgtgaattaggttaagcactaaaaaaaaaa 6534  T
Q  218 aaaagttagtaatgcttcaacacaagggttctattt 253  Q
    ||||||| || |||||||||||||||||||||||||    
T  6533 aaaagttcgtcatgcttcaacacaagggttctattt 6498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 229389 - 229622
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||  |||| |||||||||||||||||||||||||  |||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  229389 gagcagaacctttgtactagaattatttctgatcacgagcaaagcaaaatagcgatgcctatacttagtccacatgaacagaacttctccgatgaccggt 229488  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcact----cacaaa 219  Q
    |||||||| || ||| | ||||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||     | |||    
T  229489 gctagccagtttcaatggagattcaaagagaacaaggtttagagagcggcggctagggtttcaccacttttgtgaattaggttaagcactaaaaaaaaaa 229588  T
Q  220 aagttagtaatgcttcaacacaagggttctattt 253  Q
    ||||| || ||||||||||| |||||||||||||    
T  229589 aagttcgtcatgcttcaacagaagggttctattt 229622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 4445 - 4313
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4445 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 4346  T
Q  124 gctagccaattccaacgaagattcagagagaac 156  Q
    ||||||||||||||||| |||||||||||||||    
T  4345 gctagccaattccaacggagattcagagagaac 4313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 986 - 1129
Alignment:
Q  27 cagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgct 126  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  986 cagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgtctctactcagtccacacgaacataacttctccgatgaccggtgct 1085  T
Q  127 agccaattccaacgaagattcagagagaacaaagtttagagagcg 171  Q
    ||||||||||||||  ||||||||||| || ||||||||||||||    
T  1086 agccaattccaacggtgattcagagag-actaagtttagagagcg 1129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 26418 - 26276
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| | |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26418 gagcagaacctttgtagtataaatttttcttatcatgagcaaagcaaagcagcgatgcctctactcagtccacacgaacaaaacttctccgatgaccggt 26319  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttaga 166  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  26318 gctagccaattccaacaaagattcagagagaacaaagtttaga 26276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 107249 - 107479
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||| ||||| |||||||||| | |||  |||||| |||||||||| | ||| ||||||||||  |||||| |||||||||||||||||||||||| ||    
T  107249 gagcataacctttgtagaagaattgtttacgatcacaagcaaagcaacgtagcaatgcctctacatagtccaaacgaacagaacttctccgatgaccagt 107348  T
Q  124 gctagccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcactc-acaaaaag 222  Q
    |  |||||||||||||| |||||||||||||||||  |||| |||| ||||||||| ||||||||||||||||||||||  |||||   || |||||||     
T  107349 gtcagccaattccaacggagattcagagagaacaagatttaaagagtggcggctagggtttcacaacttttgtgaattatcttaagtgttcaacaaaaac 107448  T
Q  223 ttagtaatgcttcaacacaagggttctattt 253  Q
    |||||||||||||| ||||||||||||||||    
T  107449 ttagtaatgcttcagcacaagggttctattt 107479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 29186 - 29302
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggt 123  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29186 gagcagaacctttgtagcagaaatctttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatggccggt 29285  T
Q  124 gctagccaattccaacg 140  Q
    |||||||||||||||||    
T  29286 gctagccaattccaacg 29302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 247 - 62
Alignment:
Q  28 agaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctccgatgaccggtgcta 127  Q
    ||||||| ||||| | |||| ||||| ||||| ||||||  ||   ||||||| |||||||||||||| ||||||| ||||||||  ||||| |||||||    
T  247 agaacctttgtagcaaaaatgtttctaatcacaagcaaacaaacatagcgatgtctctactcagtccatacgaacataacttctctaatgactggtgcta 148  T
Q  128 gccaattccaacgaagattcagagagaacaaagtttagagagcggcggctagcgtttcacaacttttgtgaattaggttaagcact 213  Q
    ||||| | ||||| |||| |||||||||||| |||||||||||||||| ||  ||||||| |||||| |||||||||| |||||||    
T  147 gccaacttcaacggagatccagagagaacaaggtttagagagcggcggatactgtttcaccacttttatgaattaggtaaagcact 62  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 3922 - 3870
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagc 76  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3922 gagcagaacctttgtagaagaaatatttctgatcacgagcaaagcaaagcagc 3870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 87916 - 87829
Alignment:
Q  24 gagcagaacctgtgtagaagaaatatttctgatcacgagcaaagcaaagcagcgatgcctctactcagtccacacgaacagaacttctc 112  Q
    ||||||||||| ||||| | || | ||| ||||||| ||||||| |||| ||||||||||||||| |||||| ||||||| ||||||||    
T  87916 gagcagaacctttgtagtataattgtttatgatcacaagcaaagtaaagtagcgatgcctctacttagtcca-acgaacataacttctc 87829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University