View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15146_high_25 (Length: 248)
Name: NF15146_high_25
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 11622012 - 11621795
Alignment:
| Q |
13 |
agcataggtgttcattaccagcaattctcagtattttaggattgctgccgagagaatattatcaattaaattaggtattcttaatatctctgataaatca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11622012 |
agcataggtgttcattaccagcaattctcagtattttaggattgctgccgagagaatattatcaattaaattaggtattcttaatatctctgataaatca |
11621913 |
T |
|
| Q |
113 |
acatgccgtagatcctaaggttgtttatatacatgttcgtatacttatttgacttctgtactaaagtataaatatagttctaatttgtgtattaaagatg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11621912 |
acatgccgtagatcctaaggttgtttatatacatgttcgtatacttatttgacttctgtactaaagtatgaatatagttctaatttgtgtattaaagatg |
11621813 |
T |
|
| Q |
213 |
tctagtatgcaattagtt |
230 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11621812 |
tctagtatgcaattagtt |
11621795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 11640491 - 11640305
Alignment:
| Q |
17 |
taggtgttcattaccagcaattctcagtattttaggattgctgccgagagaatattatcaattaaattaggtattcttaa--tatctctgataaatcaac |
114 |
Q |
| |
|
||||||||||||| |||| | |||| | ||||||||| | ||| |||||| |||||||||| |||| ||||||| |||| ||||| |||||||||||| |
|
|
| T |
11640491 |
taggtgttcattatcagcgactctctgaattttaggagtactgttgagagactattatcaatgaaatcaggtatttttaaaatatctttgataaatcaac |
11640392 |
T |
|
| Q |
115 |
atgccgtagatcctaaggttgtttatatacatgttcgtatacttatttgacttctgtactaaagtataaatatagttctaatttgtg |
201 |
Q |
| |
|
| ||||||||||||||||||||| |||| ||||||| |||| |||||||||||| |||||||||| | ||||||| ||||||||| |
|
|
| T |
11640391 |
acgccgtagatcctaaggttgttgatatgcatgttcatatatttatttgacttccacactaaagtatgattatagttttaatttgtg |
11640305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University