View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_high_28 (Length: 221)
Name: NF15146_high_28
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 475012 - 474828
Alignment:
| Q |
19 |
atatataagctagcgatgcttatcgacataaataaatacctgcaaaatgagccaaagtgaccaggcaacactacttaccaaaagatacacacatccaagc |
118 |
Q |
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| T |
475012 |
atatataagctagcgatgcttatcgacataaataaatacctgcaaaatgagccaaagtgaccaggcaacactacttcccaaaagatacacacatccaagc |
474913 |
T |
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| Q |
119 |
aaccaactctcatcactaacggaggttatggccatgatagattttgtaggtagtatgttttctgcatttagtagctttggaccct |
203 |
Q |
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| T |
474912 |
aaccaactatcatcactaccggaggttatggccatgatagattttgtaggtagtatgttttctgcatttagtagctttggaccct |
474828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 455667 - 455584
Alignment:
| Q |
52 |
aaatacctgcaaaatgagccaaagtgaccaggcaacactacttaccaaaagatacacacatccaagcaaccaactctcatcact |
135 |
Q |
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| T |
455667 |
aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcact |
455584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 480324 - 480245
Alignment:
| Q |
54 |
atacctgcaaaatgagccaaagtgaccaggcaacactacttaccaaaagatacacacatccaagcaaccaactctcatca |
133 |
Q |
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| T |
480324 |
atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatca |
480245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 27491398 - 27491546
Alignment:
| Q |
52 |
aaatacctgcaaaatgagccaaagtgaccaggcaacactacttaccaaaagatacacacatccaagcaaccaactctcatcactaacggaggttatggcc |
151 |
Q |
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||||||||||||||| ||||||| |||||||||||||| ||| | |||||| || |||||||||||||||| |||||||||| | ||||| || | |
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| T |
27491398 |
aaatacctgcaaaataagccaaactgaccaggcaacacagcttccaaaaagaaccaaacatccaagcaaccaattctcatcacttcctaaggttgtgcca |
27491497 |
T |
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| Q |
152 |
atgatagattttgtaggtagtatgttttctgcatttagtagctttggaccct |
203 |
Q |
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| T |
27491498 |
atgattgattttgaag---ttatgctttctgcatttagcagctttggaccct |
27491546 |
T |
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