View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_high_4 (Length: 449)
Name: NF15146_high_4
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_high_4 |
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| [»] chr6 (7 HSPs) |
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| [»] scaffold0896 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 7140954 - 7140508
Alignment:
| Q |
1 |
tgtttcttctactgcaagaaatccggaatcccgtggagagattaagaacaaaatataacgaccatgataacgaagacaaactaagtgatttacacgatga |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7140954 |
tgtttcttctactgcaagaaatccagaatcccgtggagagattaagaacaaaatataacgaccatgataacgaagacaaactaagtgatttacacgatga |
7140855 |
T |
|
| Q |
101 |
gaatgaagacaagttaagtgatttacccaactgtgtttcacttcacatactcnnnnnnnnnngaatactaaatacgcagttcaaacttgtattttgtcca |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7140854 |
gaatgaagacaagttaagtgatttacccgactgtgttttacttcacatactctctttttt--gaatactaaatacgcagttcaaacttgtattttgtcca |
7140757 |
T |
|
| Q |
201 |
aaagatggaagaatatatggaagtgtcttccaagccttataataggttattcacattttaaggatctcaaaggttttgaatatttcattcatggattttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7140756 |
aaagatggaagaatatatggaagtgtcttccaagccttataataggttattcacattttaaggatctcaaaggttttgaatatttcattcatggattttt |
7140657 |
T |
|
| Q |
301 |
tggtacacgtgatcgctcaacagcgctgcaagttcttgattttcgtgaggagtgttatgtggggtatcaaagccatctcaaatggattgtcagatatgct |
400 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7140656 |
tggtacacgtgattgctcaacggcgctgcaagttcttgattttagtgaggagtgttatgtggggtatcaaagccatctcgaatggattgtcagatatgct |
7140557 |
T |
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| Q |
401 |
tttacgcataatgtcaagcgagtacgaatcgatgtcagaaaagttcaac |
449 |
Q |
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| T |
7140556 |
tttacgcataatgtcaagcgagtacgaatcgatgtcagaaaagttcaac |
7140508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 8680568 - 8680128
Alignment:
| Q |
1 |
tgtttcttctactgcaagaaatccggaatcccgtggagagattaagaacaaaatataacgaccatgataacgaagacaaactaagtgatttacacgatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8680568 |
tgtttcttctactgcaagaaatccggaatcccgtggagagattaagaacaaaatataacgaccatgataacgaagacaaactaagtgatttacacgatga |
8680469 |
T |
|
| Q |
101 |
gaatgaagacaagttaagtgatttacccaactgtgtttcacttcacatactcnnnnnnnnnngaatactaaatacgcagttcaaacttgtattttgtcca |
200 |
Q |
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||||||||||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8680468 |
gaatgaagacaagttaagtgatttagccgactgtgttttacttcacatactc--tcttttttgaatactaaatacgcagttcaaacttgtattttgtcca |
8680371 |
T |
|
| Q |
201 |
aaagatggaagaatatatggaagtgtcttccaagccttataataggttattcacattttaaggatctcaaaggttttgaatatttcattcatggattttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| || ||| || |||||||||||| | ||||| |
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| T |
8680370 |
aaagatggaagaatatatggaagtgtcttccaagccttataatacgttattcacactttaagaatctcagagatttcgagtatttcattcattggttttt |
8680271 |
T |
|
| Q |
301 |
tggtacacgtgatcgctcaacagcgctgcaagttcttgattttcgtgaggagtgttatgtggggtatcaa---agccatctcaaatggattgtcagatat |
397 |
Q |
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||||||||||||||||||| || ||| |||||||||||||| || ||||| | || | |||||| || |||||| ||||||||||||||| |
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| T |
8680270 |
gggtacacgtgatcgctcaatcgcactggaagttcttgatttttgtcaggagaatcttgatagctatcaaattagtcatctcggatggattgtcagatac |
8680171 |
T |
|
| Q |
398 |
gcttttacgcataatgtcaagcgagtacgaatcgatgtcagaa |
440 |
Q |
| |
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|||||| | |||||||||||| ||||||||||| |||| |||| |
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| T |
8680170 |
gctttttcacataatgtcaagtgagtacgaatcaatgttagaa |
8680128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 170 - 445
Target Start/End: Complemental strand, 8656702 - 8656427
Alignment:
| Q |
170 |
aaatacgcagttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttccaagccttataataggttattcacattttaaggatctca |
269 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8656702 |
aaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagcgtcttacaagccttataataggttattcacattttaaggatctca |
8656603 |
T |
|
| Q |
270 |
aaggttttgaatatttcattcatggattttttggtacacgtgatcgctcaacagcgctgcaagttcttgattttcgtgaggagtgttatgtggggtatca |
369 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
8656602 |
aaggttttgaatatttaattcatggattttttggtacacgtgatcgctcaacggcgctgcaagttcttaattttcgtgaggaatgttatgtggggtatca |
8656503 |
T |
|
| Q |
370 |
aagccatctcaaatggattgtcagatatgcttttacgcataatgtcaagcgagtacgaatcgatgtcagaaaagtt |
445 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
8656502 |
aagccatctcgaatggattgtcagatatgcttttacgcataatgtcaagcgaatacgaatcgatgtcaaaaaagtt |
8656427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 7115597 - 7115514
Alignment:
| Q |
170 |
aaatacgcagttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttccaagccttataataggttattca |
253 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |
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| T |
7115597 |
aaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttccaagccttaaaataggttattca |
7115514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 7120669 - 7120586
Alignment:
| Q |
170 |
aaatacgcagttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttccaagccttataataggttattca |
253 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |
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| T |
7120669 |
aaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttccaagccttaaaataggttattca |
7120586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 7124073 - 7123990
Alignment:
| Q |
170 |
aaatacgcagttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttccaagccttataataggttattca |
253 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |
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| T |
7124073 |
aaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttccaagccttaaaataggttattca |
7123990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 7175481 - 7175393
Alignment:
| Q |
174 |
acgcagttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttccaagccttataataggttattcacattttaag |
262 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||| | |||||| | ||| ||| ||||||| || ||| |||||| |||||| |
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| T |
7175481 |
acgcagttcaaacttgcattttatccactagatggaagaatctctggaagcgcctttcaaaccttatagtaagttcttcacaatttaag |
7175393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 170 - 445
Target Start/End: Original strand, 1484 - 1759
Alignment:
| Q |
170 |
aaatacgcagttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttccaagccttataataggttattcacattttaaggatctca |
269 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1484 |
aaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagcgtcttacaagccttataataggttattcacattttaaggatctca |
1583 |
T |
|
| Q |
270 |
aaggttttgaatatttcattcatggattttttggtacacgtgatcgctcaacagcgctgcaagttcttgattttcgtgaggagtgttatgtggggtatca |
369 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
1584 |
aaggttttgaatatttaattcatggattttttggtacacgtgatcgctcaacggcgctgcaagttcttaattttcgtgaggaatgttatgtggggtatca |
1683 |
T |
|
| Q |
370 |
aagccatctcaaatggattgtcagatatgcttttacgcataatgtcaagcgagtacgaatcgatgtcagaaaagtt |
445 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
1684 |
aagccatctcgaatggattgtcagatatgcttttacgcataatgtcaagcgaatacgaatcgatgtcaaaaaagtt |
1759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 2267 - 2350
Alignment:
| Q |
170 |
aaatacgcagttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttccaagccttataataggttattca |
253 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |
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| T |
2267 |
aaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagtgtcttccaagccttaaaataggttattca |
2350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 7125963 - 7126022
Alignment:
| Q |
180 |
ttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttccaagcctta |
239 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | ||||| ||||||||| ||||| |
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|
| T |
7125963 |
ttcaaacttgtatcttgtccaaaagatggaagaatctctggaaacgtcttccaaccctta |
7126022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 13490977 - 13490933
Alignment:
| Q |
179 |
gttcaaacttgtattttgtccaaaagatggaagaatatatggaag |
223 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||| |||||||| |
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| T |
13490977 |
gttcaaactttaattttatccaaaagatggaagaatgtatggaag |
13490933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 32413655 - 32413713
Alignment:
| Q |
174 |
acgcagttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttcca |
232 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||||||||| | |||||| |||||||| |
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| T |
32413655 |
acgccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttcca |
32413713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 43864101 - 43864049
Alignment:
| Q |
179 |
gttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttcc |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| | |||||| ||||||| |
|
|
| T |
43864101 |
gttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcc |
43864049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 43875268 - 43875216
Alignment:
| Q |
179 |
gttcaaacttgtattttgtccaaaagatggaagaatatatggaagtgtcttcc |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| | |||||| ||||||| |
|
|
| T |
43875268 |
gttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcc |
43875216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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