View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_low_1 (Length: 613)
Name: NF15146_low_1
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 6e-82; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 96 - 311
Target Start/End: Complemental strand, 44476374 - 44476167
Alignment:
| Q |
96 |
agaacagagatgatactaaaatttgttatattaaaaatattcttctagttctatgcaattaactaaaattagtgtccatatgtgtagtgtaagagacaaa |
195 |
Q |
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| T |
44476374 |
agaacagagatgatactaaaatttgttatattaaaaatattct---agttctatgcaattaactaaaattagtgtccatatgtgtagtttaagagacaaa |
44476278 |
T |
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| Q |
196 |
tattaattaatctcataattaaaaataagatattaatttaacttgatcattcattttttataaagaaatatgtttannnnnnnagttattagctggtaaa |
295 |
Q |
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| T |
44476277 |
tattaat----ctcataattaaaaataagatattaatttaacttgatcattcattttttataaagaaatatgttta-tttcttagttattagctggtaaa |
44476183 |
T |
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| Q |
296 |
aacaaacagcaattaa |
311 |
Q |
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|||||||||||||||| |
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| T |
44476182 |
aacaaacagcaattaa |
44476167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 493 - 598
Target Start/End: Complemental strand, 44475740 - 44475635
Alignment:
| Q |
493 |
caaagttgaagaaaaataattacacgggctgaatggtttgattgagnnnnnnntacagcaaatcaacattgtcatcggtttatcgaaagcaatatgtgtt |
592 |
Q |
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| T |
44475740 |
caaagttgaagaaaaataattacacgggctgaatggtttgattgagaaaaaaatacagcaaatcaacattgtcatcggtttatcgaaagcaatatgtgtt |
44475641 |
T |
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| Q |
593 |
atttga |
598 |
Q |
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|||||| |
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| T |
44475640 |
atttga |
44475635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 44476614 - 44476521
Alignment:
| Q |
5 |
tttctgactaatgtatggtccgaccaannnnnnnngttaaacaagtataattagttgtattttcttgatgaaggtatagcacgatacgagaaga |
98 |
Q |
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| T |
44476614 |
tttctgactaatgtatggtccgaccaattttttttgttaaacaagtataattagttgtatttttttgatgaaggtatagcacgatgtgagaaga |
44476521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 392 - 470
Target Start/End: Complemental strand, 44476105 - 44476026
Alignment:
| Q |
392 |
ttattgaagatttgacctttgacaataatcggcgccagaggga--acctaaaggaatataatgaacgagttgaagttgaag |
470 |
Q |
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| T |
44476105 |
ttattgaagatttgacctttgacaataatcggcgccagagggaacacctaaaggaat-gaacgaacgagttgaagttgaag |
44476026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 44471777 - 44471698
Alignment:
| Q |
107 |
gatactaaaatttgttatattaaaaatattcttctagttctatgcaattaactaaaattagtgtccatatgtgtagtgtaagagac |
192 |
Q |
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| T |
44471777 |
gatactagaatttgttatattaaaa----tattatagttctatgcaattaactaaaattagtctc--tatatgtagtgtaagagac |
44471698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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