View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_low_10 (Length: 379)
Name: NF15146_low_10
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 47336752 - 47336402
Alignment:
| Q |
19 |
tgaggctcatcgatcgctacttttttggtgagcagttaaagattatcaacatcatgnnnnnnngtttttctagaatttaaatttggatttaaagtcagaa |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47336752 |
tgaggctcatcgatcactacttttttggtgagcagttaaagattatcaacatcatgaaaaaaagtttttctagaatttaaatttggatttaaagtcagaa |
47336653 |
T |
|
| Q |
119 |
ttgataagattattatattttaataaaacaaatttcttcatgaaattaggtccaaaagcttcaaactcaatcatcaatggctgccactcatatgtacacg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47336652 |
ttgataagattattatattttaataaaacaaatttcttcatgaaattaggtccaaaagcttcaaactcaatcatcaatggctgccactcatatgtacaca |
47336553 |
T |
|
| Q |
219 |
aataagtagcagcataaaatcactcctcattaga-nnnnnnngaatgctagatctaattgttattgtctgaaactacttattcttcatgtcaagtatagc |
317 |
Q |
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|| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47336552 |
aacaagtagcagcagaaaatcactcctcattagattttttttgaatgctaaatctaattgttattgtctgaaactacttattcttcatgtcaagtatagc |
47336453 |
T |
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| Q |
318 |
agcacataaacacaacgtcacaacctctacttcatgtctttcttccccttt |
368 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47336452 |
agcacgtaaacacaacgtcacaacctctacttcatgtctttcttccccttt |
47336402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 47321956 - 47321839
Alignment:
| Q |
19 |
tgaggctcatcgatcgctacttttttggtgagcagttaaagattatcaacatcatgnnnnnnngtttttctagaatttaaatttggatttaaagtcagaa |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47321956 |
tgaggctcatcgatcactacttttttggtgagcagttaaagattatcaacatcatgaaaaaaagtttttctagaatttaaatttggatttaaagtcagaa |
47321857 |
T |
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| Q |
119 |
ttgataagattattatat |
136 |
Q |
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|||||||||||||||||| |
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| T |
47321856 |
ttgataagattattatat |
47321839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 191 - 364
Target Start/End: Complemental strand, 12594921 - 12594746
Alignment:
| Q |
191 |
atcaatggctgccactcatatgtacacgaataagtagcagcataaaatcactcctcattagannnnnnn--gaatgctagatctaattgttattgtctga |
288 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
12594921 |
atcaatggctgccactcatatgtacacaaacaagtagcagcagaaaatcactcctcattagatttttttttgaatgctagatctgattgttattgtctga |
12594822 |
T |
|
| Q |
289 |
aactacttattcttcatgtcaagtatagcagcacataaacacaacgtcacaacctctacttcatgtctttcttccc |
364 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
12594821 |
aactacttattcttcatgtcaagtttagcagcacatatacacaacgtcacaacctctacttcatctctttcttccc |
12594746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 12599612 - 12599495
Alignment:
| Q |
19 |
tgaggctcatcgatcgctacttttttggtgagcagttaaagattatcaacatcatgnnnnnnngtttttctagaatttaaatttggatttaaagtcagaa |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12599612 |
tgaggctcatcgatcactacttttttggtgagcagttaaagattatcaacatcatgaaaaaaagtttttctagaatttaaatttggatttaaagtcagaa |
12599513 |
T |
|
| Q |
119 |
ttgataagattattatat |
136 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
12599512 |
ttgataagattattatat |
12599495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 12597265 - 12597212
Alignment:
| Q |
136 |
ttttaataaaacaaatttcttcatgaaattaggtccaaaagcttcaaactcaat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12597265 |
ttttaataaaacaaatttcttcatgaaattaggtccaaaagcttcaaactcaat |
12597212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 33477267 - 33477142
Alignment:
| Q |
83 |
tttttctagaatttaaatttggatttaaagtcagaattgataagattattatattttaataaaacaaatttcttcatgaaattaggtccaaaagcttcaa |
182 |
Q |
| |
|
|||||| ||||||||| || ||||||||||| |||||| |||| |||| || |||||||||||| ||| | ||| |||||| | ||||||||||||| |
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| T |
33477267 |
tttttccagaatttaatttcggatttaaagtgagaattaataatattagtacattttaataaaaataatccc--cataaaattaagcccaaaagcttcaa |
33477170 |
T |
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| Q |
183 |
actcaatcatcaatggctgccactcata |
210 |
Q |
| |
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|| ||||||||||||||| ||||||||| |
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| T |
33477169 |
acacaatcatcaatggctaccactcata |
33477142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 7171575 - 7171623
Alignment:
| Q |
161 |
aaattaggtccaaaagcttcaaactcaatcatcaatggctgccactcat |
209 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
7171575 |
aaattaggtccagaagcttcaaacacaatcatcaatggctgccactcat |
7171623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 9112786 - 9112661
Alignment:
| Q |
83 |
tttttctagaatttaaatttggatttaaagtcagaattgataagattattatattttaataaaacaaatttcttcatgaaattaggtccaaaagcttcaa |
182 |
Q |
| |
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|||||| ||||||||| || ||||||||||| |||||| |||| |||| || |||||||| ||| ||| | ||| |||||| | ||| ||||||||| |
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| T |
9112786 |
tttttccagaatttaatttcggatttaaagtgagaattaataatattaatacattttaatcaaaataatccc--cataaaattaagcccataagcttcaa |
9112689 |
T |
|
| Q |
183 |
actcaatcatcaatggctgccactcata |
210 |
Q |
| |
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|| ||||||||||||||| ||||||||| |
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| T |
9112688 |
acacaatcatcaatggctaccactcata |
9112661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 9206319 - 9206361
Alignment:
| Q |
161 |
aaattaggtccaaaagcttcaaactcaatcatcaatggctgcc |
203 |
Q |
| |
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|||||||| ||| ||||||||||| |||||||||||||||||| |
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| T |
9206319 |
aaattaggcccagaagcttcaaacacaatcatcaatggctgcc |
9206361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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