View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15146_low_13 (Length: 341)
Name: NF15146_low_13
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 12692696 - 12692401
Alignment:
| Q |
1 |
cttcatcgtcctcctcttcttctcgtcagtcgtatggcaactacacacctcctcctacctcttctttgcatcattcgtatggcaacatattttcctttcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12692696 |
cttcatcgtcctcctcttcttctcgtcagtcgtatggcaactacacacctgctcctacctcttctttgcatcattcgtatggtaacatattttcctttcg |
12692597 |
T |
|
| Q |
101 |
tcgatcatacgcaaacaatccatctttctataagtctaatactcaatatgagtacggaaggacatcgactggtgaaccgacgaaaaagaaggatgctcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12692596 |
tcgatcatacgcaaacaatccatctttctataagtctaatactcagtatgagtacggaaggacatcgactggtgaaccgacgaaaaagaaggatgctcct |
12692497 |
T |
|
| Q |
201 |
atttatagaaagttgccttgcagcctggaacaactttatactggggctgttaagaggatgaagataaccagaaccctaattgtaaaagggtaaatt |
296 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
12692496 |
atttatagaaagttgcgttgcagcctggggcaactttatactggggctgttaagaggatgaagattaccagaaacttaattgtaaaagggtaaatt |
12692401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University