View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15146_low_14 (Length: 332)

Name: NF15146_low_14
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15146_low_14
NF15146_low_14
[»] chr5 (2 HSPs)
chr5 (19-320)||(11615772-11616078)
chr5 (182-222)||(11684520-11684560)
[»] chr1 (1 HSPs)
chr1 (184-217)||(36495403-36495436)
[»] chr8 (3 HSPs)
chr8 (190-222)||(900629-900661)
chr8 (185-217)||(18591889-18591921)
chr8 (189-221)||(36643794-36643826)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 11616078 - 11615772
Alignment:
Q  19 aatcacgtgcttggccgtttttgttggatggtcgtgatttgattggaattgcggctactgggtcaggttagttttgatgtttactgcatt----aattga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||    
T  11616078 aatcacgtgcttggccgtttttgttggatggtcgtgatttgattggaattgcggctactgggtcaggttagttttgatgtttactgcattaattaattga 11615979  T
Q  115 atttgattatcattttggtggttattttataattgttatttgttaccttgtaatattaatatttagtattagggtctgtttgaattggtttatttgagct 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11615978 atttgattatcattttggtggttattttataattgttatttgttactttgtaatattaatatttagtattagggtctgtttgaa-tggtttatttgagct 11615880  T
Q  215 tatttacttacaatacttacataagttcttgttgtgagactgtttggaagaat-----------ttgagaaaacaaggccctgtttggataaataacttc 303  Q
    ||||         ||||||||||||| ||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||    
T  11615879 tatt---------tacttacataagtacttgttgtgagactgtttggaagaatttgagaaaacattgagaaaacaaggccctgtttggataaataacttc 11615789  T
Q  304 atctgcagcttaagtat 320  Q
    |||||||||||||||||    
T  11615788 atctgcagcttaagtat 11615772  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 11684560 - 11684520
Alignment:
Q  182 attagggtctgtttgaattggtttatttgagcttatttact 222  Q
    ||||||||||||||  |||||||||||||||||||| ||||    
T  11684560 attagggtctgtttagattggtttatttgagcttatctact 11684520  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 36495403 - 36495436
Alignment:
Q  184 tagggtctgtttgaattggtttatttgagcttat 217  Q
    ||||||||||||| ||||||||||||||||||||    
T  36495403 tagggtctgtttggattggtttatttgagcttat 36495436  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 900629 - 900661
Alignment:
Q  190 ctgtttgaattggtttatttgagcttatttact 222  Q
    |||||||||||||||||||||||||||| ||||    
T  900629 ctgtttgaattggtttatttgagcttatatact 900661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 18591889 - 18591921
Alignment:
Q  185 agggtctgtttgaattggtttatttgagcttat 217  Q
    |||||||||||||||||||||| ||||||||||    
T  18591889 agggtctgtttgaattggtttaattgagcttat 18591921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 36643794 - 36643826
Alignment:
Q  189 tctgtttgaattggtttatttgagcttatttac 221  Q
    |||||||| ||||||||||||||||||||||||    
T  36643794 tctgtttggattggtttatttgagcttatttac 36643826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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