View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_low_16 (Length: 316)
Name: NF15146_low_16
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 309
Target Start/End: Original strand, 1324640 - 1324915
Alignment:
| Q |
24 |
agatgggcggtggatcaaatgttacatcaagaagattggctcgtgtgatgttcttcatgcagaaacgtggtgagtgtatatgaggttggatatggcttag |
123 |
Q |
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| T |
1324640 |
agatggacggtggatcaaatgttacattaagaagattggctcgtgtgatgttcttcatgcagaaacgtggtgagtgtatctaaggttagatagggcttat |
1324739 |
T |
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| Q |
124 |
agagatcatacatcgttatgtgtgtgagtgttctaaactctaaaatactgagttaaatttttattcttaaagaaaaggtgtcttgatagataagaagtat |
223 |
Q |
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| T |
1324740 |
agagatcatacatcgttatgtgtgtgagtgttctaaactctaaaatactgagttaaatttttactcataaagaaaaggtgtcttggtagataagaagtat |
1324839 |
T |
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| Q |
224 |
gagttaaacacatctatgtaaagaataatattttgaaaatattcgtacttgttttttaatatatgtgaaaattgtaaaaagtaaat |
309 |
Q |
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||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
1324840 |
gagttaaac----------aaagaagaatattttgaaaatattcatacttgttttttaatatatgtgaaaattgtaaaaggtaaat |
1324915 |
T |
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