View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_low_17 (Length: 291)
Name: NF15146_low_17
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 15523185 - 15522888
Alignment:
| Q |
1 |
gatacttatttgtttccacctttgtttcaatatcctcaaaatgttaaaaacctttccatatactacaattgtacttccactatctctcaagatttagcag |
100 |
Q |
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| T |
15523185 |
gatacttatttgtttccacctttgtttcaatatccccaaaatgttaaaaacctttccatatactacaattgtacttccactatctctcaagatttagcag |
15523086 |
T |
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| Q |
101 |
aaaattctgtttgtggatcacactatccttcttttggctatgttggaaatgaagataagttgtttgaaga------------------agatccgtctct |
182 |
Q |
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| T |
15523085 |
aaaattctgtttgtggatctcactatccttcttttggctatgtcggaaatgaagataagttgtttgaagaagataagttgtttgaagaagatccgtctct |
15522986 |
T |
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| Q |
183 |
gagatgtcagaaacatatcaaagtgccggtaggatcatattttcttctagaggcggattattttgagcgtggtaaacttgaaagagtattaaatgatg |
280 |
Q |
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| T |
15522985 |
gagatgtcagaaacatatcaaagtgccggtaggatcatattttcttctggaggcggattattttgagcgtggtaaacttgaaagagtattaaatgatg |
15522888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 15493575 - 15493704
Alignment:
| Q |
149 |
atgaagataagttgtttgaagaagatccgtctctgagatgtcagaaacatatcaaagtgccggtaggatcatattttcttctagaggcggattattttga |
248 |
Q |
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| T |
15493575 |
atgaagataagttgtttgaagaagatccttctctgaaatgtcagaaacatatcaaagtgccaataggagcatattctcctctagagatggattattttga |
15493674 |
T |
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| Q |
249 |
gcgtggtaaacttgaaagagtattaaatga |
278 |
Q |
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| T |
15493675 |
gggtggtaaacttaaaagagtattgaatga |
15493704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 31212009 - 31212161
Alignment:
| Q |
4 |
acttatttgtttccacctttgtttcaatatcctcaaaatgttaaaaacctttccatatactacaattgtacttccactatctctcaagatttagcagaaa |
103 |
Q |
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|||||||||| |||| |||||||||||||||| |||||||| || ||| | ||||| |||| ||||||| ||||||| |||||||| || || |||| |
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| T |
31212009 |
acttatttgtctccaactttgtttcaatatccacaaaatgtcaacaacatcaccatacactataattgtagttccactgtctctcaatatatacttgaaa |
31212108 |
T |
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| Q |
104 |
attctgtttgtggatcacactatccttcttttggctatgttggaaatgaagat |
156 |
Q |
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| T |
31212109 |
attctctatgtggatcacacgacccttctttttgttatattggtaatgaagat |
31212161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31002081 - 31002155
Alignment:
| Q |
1 |
gatacttatttgtttccacctttgtttcaatatcctcaaaatgttaaaaacctttccatatactacaattgtact |
75 |
Q |
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| T |
31002081 |
gatacttatttgtttccacctatgtttcaatatcttcgaaatgtcataaacatcacaatatactataattgtact |
31002155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31012636 - 31012671
Alignment:
| Q |
1 |
gatacttatttgtttccacctttgtttcaatatcct |
36 |
Q |
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| T |
31012636 |
gatacttatttgtttccacctctgtttcaatatcct |
31012671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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