View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15146_low_25 (Length: 250)

Name: NF15146_low_25
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15146_low_25
NF15146_low_25
[»] chr1 (9 HSPs)
chr1 (1-239)||(48656393-48656631)
chr1 (95-198)||(48639763-48639866)
chr1 (77-219)||(48652965-48653107)
chr1 (110-215)||(48628715-48628820)
chr1 (96-198)||(48667010-48667112)
chr1 (4-239)||(11547056-11547291)
chr1 (59-165)||(48618330-48618436)
chr1 (96-188)||(48661425-48661517)
chr1 (110-171)||(48585217-48585278)
[»] chr3 (1 HSPs)
chr3 (33-171)||(19665660-19665798)
[»] chr8 (2 HSPs)
chr8 (82-198)||(27223842-27223958)
chr8 (86-198)||(27228033-27228145)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 48656631 - 48656393
Alignment:
Q  1 tgtagtccttaaacacagtgaaattcctgttcttctgcatccttctaatacatatccctttctaggcccactcattttaggacaaattaagaatttgtct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48656631 tgtagtccttaaacacagtgaaattcctgttcttctgcatccttctaatacatatccctttctaggcccactcattttaggacaaattaagaatttgtct 48656532  T
Q  101 aaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcagtcatcataagaccaattggtccgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48656531 aaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcaatcatcataagaccaattggtccgg 48656432  T
Q  201 tgttcaacaacccaaacataataggtgtaagtaatattc 239  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  48656431 tgttcaacaacccaaacataataggtgcaagtaatattc 48656393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 198
Target Start/End: Complemental strand, 48639866 - 48639763
Alignment:
Q  95 ttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcagtcatcataagaccaattg 194  Q
    ||||||||||  || |||||||| ||||||||||||||||||||||||| |||||| || |||||||||||  |||| ||| ||| ||||||||| ||||    
T  48639866 ttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgatttcatagattatatttcaaaaaaatcaatcaccataagacctattg 48639767  T
Q  195 gtcc 198  Q
    ||||    
T  48639766 gtcc 48639763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 48653107 - 48652965
Alignment:
Q  77 ttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcag 176  Q
    |||| ||||||||||||||| ||||||| ||| ||||| || || || ||||||||||||||||||| |||||| || || ||||||||  | || |||     
T  48653107 ttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaacaaatcaa 48653008  T
Q  177 tcatcataagaccaattggtccggtgttcaacaacccaaacat 219  Q
    || |||||||||| ||||||||  |||| |||||| |||||||    
T  48653007 tcctcataagacccattggtccattgtttaacaactcaaacat 48652965  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 48628820 - 48628715
Alignment:
Q  110 tgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcagtcatcataagaccaattggtccggtgttcaaca 209  Q
    |||||||| | ||||||||||||||||||||||| |||||| ||||||||| ||||  |||| |||||| |||| ||||| ||||||||  ||||||| |    
T  48628820 tgtgtattagcggatacctatgaagaactagagcatgatttcatcgattatctttccaaaaaatcagtcctcattagacccattggtcctctgttcaaga 48628721  T
Q  210 acccaa 215  Q
    ||||||    
T  48628720 acccaa 48628715  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 48667112 - 48667010
Alignment:
Q  96 tgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcagtcatcataagaccaattgg 195  Q
    |||||||||  || |||||||| |||||||||| ||||||| |||||| |||||| |||||||||||||||||||| ||| ||  |||||||||  ||||    
T  48667112 tgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcggaaaaatcaatcgccataagacccgttgg 48667013  T
Q  196 tcc 198  Q
    |||    
T  48667012 tcc 48667010  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 11547291 - 11547056
Alignment:
Q  4 agtccttaaacacagtgaaattcctgttcttctgcatccttctaatacatatccctttctaggcccactcattttaggacaaattaagaatttgtctaaa 103  Q
    |||||||||| ||| |||||| || | | |||| ||||||| || | ||||||| ||||||||  ||||||| |||| |||  |||||||||| ||||||    
T  11547291 agtccttaaatacaatgaaatcccagattttcttcatccttttagtccatatccatttctagggacactcatcttagaacagtttaagaatttatctaaa 11547192  T
Q  104 gcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcagtcatcataagaccaattggtccggtgt 203  Q
    |  || ||||| || || || ||||||||||||||||| | |||||| || || |||||| |  |||| ||  ||  ||||||||| ||||||||  |||    
T  11547191 gtgttttgtgttttagtagaaacctatgaagaactagaacatgatttcattgactatattacaaaaaaatccatccacataagacctattggtccattgt 11547092  T
Q  204 tcaacaacccaaacataataggtgtaagtaatattc 239  Q
    | || || ||||| || | ||||| |||||||||||    
T  11547091 ttaaaaatccaaatattaaaggtgcaagtaatattc 11547056  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 48618330 - 48618436
Alignment:
Q  59 tttctaggcccactcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgatt 158  Q
    ||||||||  ||||||| |||| |||  |||||||||||||||||| ||| ||||| || || || ||||||||||||||||||| |||||| || || |    
T  48618330 tttctagggacactcatcttagaacagtttaagaatttgtctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgact 48618429  T
Q  159 atatttc 165  Q
    |||||||    
T  48618430 atatttc 48618436  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 48661517 - 48661425
Alignment:
Q  96 tgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcagtcatcataagac 188  Q
    |||||||||  || |||||||| |||||||||| ||||||| |||||| |||||| ||||||||||||||  |||| ||| ||| ||||||||    
T  48661517 tgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcaaaaaaatcaatcaccataagac 48661425  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 48585278 - 48585217
Alignment:
Q  110 tgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaa 171  Q
    |||||||| ||||||||||||||||||||||||| ||| || || |||||||||||| ||||    
T  48585278 tgtgtattagtggatacctatgaagaactagagcatgaattcatagattatatttcgaaaaa 48585217  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 19665660 - 19665798
Alignment:
Q  33 ttctgcatccttctaatacatatccctttctaggcccactcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacctatga 132  Q
    |||| ||||||| || || |||| | ||||||||  |||||||||||| |||  |||||||||| |||||||  || |||||||| |||||||  |||||    
T  19665660 ttctacatccttttagtaaatattcatttctagggacactcattttagaacagtttaagaatttatctaaagtgttttgtgtattggtggatagttatga 19665759  T
Q  133 agaactagagcctgattttatcgattatatttcggaaaa 171  Q
     |||||||||| |||||  ||||| ||||||||| ||||    
T  19665760 tgaactagagcatgattacatcgactatatttcgaaaaa 19665798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 27223958 - 27223842
Alignment:
Q  82 acaaattaagaatttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcagtcatc 181  Q
    |||||||||||| ||||||||||  || |||||||| || ||||| ||||| |||||||| | |||||| ||||| ||| ||||  |||| |||||||      
T  27223958 acaaattaagaacttgtctaaagtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgactatgtttctaaaaattcagtcaaa 27223859  T
Q  182 ataagaccaattggtcc 198  Q
    |||||||| ||||||||    
T  27223858 ataagacctattggtcc 27223842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 27228145 - 27228033
Alignment:
Q  86 attaagaatttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcagtcatcataa 185  Q
    |||||||| ||||||||||  || |||||||| |||||||||||||| ||| | || | |||||| ||  ||||||||||  || | || ||| | ||||    
T  27228145 attaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaatattctgtcttaataa 27228046  T
Q  186 gaccaattggtcc 198  Q
    |||| ||||||||    
T  27228045 gacccattggtcc 27228033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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