View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_low_28 (Length: 245)
Name: NF15146_low_28
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7140431 - 7140206
Alignment:
| Q |
1 |
atttccaaattctttgaattttccagcattaacctacttgtttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagca |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7140431 |
atttcaaaattctttgaattttccagcattaacctacttctttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagca |
7140332 |
T |
|
| Q |
101 |
tttaagaggttgaatagtttgattcttcaaaattgttgctcttttaacaaacaaaacctatgcatatcaagtgccacgcttaccaatttaacaatagact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || | || ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
7140331 |
tttaagaggttgaatagtttgattcttcaaaattgtcgcacccttgacaaacaaaacctttgcatatcaagtgccacgctcaccaatttaacaatagact |
7140232 |
T |
|
| Q |
201 |
acagctcctcggcattaggttattgc |
226 |
Q |
| |
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|| |||||| |||||||||||||||| |
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|
| T |
7140231 |
acggctcctgggcattaggttattgc |
7140206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 8656346 - 8656121
Alignment:
| Q |
1 |
atttccaaattctttgaattttccagcattaacctacttgtttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagca |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8656346 |
atttccaaattctttgaaatttccagcattaacctacttatttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagca |
8656247 |
T |
|
| Q |
101 |
tttaagaggttgaatagtttgattcttcaaaattgttgctcttttaacaaacaaaacctatgcatatcaagtgccacgcttaccaatttaacaatagact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
8656246 |
tttaagaggttgaatagtttgattcttcaaaattgtcgctctcttgacaaacaaaacctctgcatatcaagtgccacactcaccaatttaacaatagact |
8656147 |
T |
|
| Q |
201 |
acagctcctcggcattaggttattgc |
226 |
Q |
| |
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|| ||||| |||||||||||||||| |
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| T |
8656146 |
acgactcctgggcattaggttattgc |
8656121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 8680042 - 8679842
Alignment:
| Q |
1 |
atttccaaattctttgaattttccagcattaacctacttgtttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagca |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8680042 |
atttccaaattctttgaattttccatgattaacctacttgtttttagggtcctttgactttggtgtggacgataatggccgtgttgagcctttttcagca |
8679943 |
T |
|
| Q |
101 |
tttaagaggttgaatagtttgattcttcaaaattgttgctcttttaacaaacaaaacctatgcatatcaagtgccacgcttaccaatttaacaatagact |
200 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| | || | ||| ||||||| |||||||| ||||||||||| ||||||||||||||||||| |
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| T |
8679942 |
tttaagaggttgaatagcttgattgttcaaaattgttgcgttcttgataaataaaacctttgcatatcgagtgccacgctcaccaatttaacaatagact |
8679843 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
8679842 |
a |
8679842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 7115220 - 7115093
Alignment:
| Q |
1 |
atttccaaattctttgaattttccagcattaacctacttgtttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |||||| | |||||| ||||||||| ||||| ||| |
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| T |
7115220 |
atttccaaattctttgaattttccagcattaactagtttgtctttatggtcctttgactttcgtgtggttggtgatggtaatgttgagcccttttcggca |
7115121 |
T |
|
| Q |
101 |
tttaagaggttgaatagtttgattcttc |
128 |
Q |
| |
|
||||||||||| || | |||||| |||| |
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| T |
7115120 |
tttaagaggttaaaaaatttgatacttc |
7115093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 7120292 - 7120165
Alignment:
| Q |
1 |
atttccaaattctttgaattttccagcattaacctacttgtttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |||||| | |||||| ||||||||| ||||| ||| |
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| T |
7120292 |
atttccaaattctttgaattttccagcattaactagtttgtctttatggtcctttgactttcgtgtgggtggtgatggtaatgttgagcccttttcggca |
7120193 |
T |
|
| Q |
101 |
tttaagaggttgaatagtttgattcttc |
128 |
Q |
| |
|
||||||||||| || | |||||| |||| |
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| T |
7120192 |
tttaagaggttaaaaaatttgatccttc |
7120165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 7123696 - 7123569
Alignment:
| Q |
1 |
atttccaaattctttgaattttccagcattaacctacttgtttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |||||| | |||||| ||||||||| ||||| ||| |
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| T |
7123696 |
atttccaaattctttgaattttccagcattaactagtttgtctttacggtcctttgactttcgtgtggttggtgatggtaatgttgagcccttttcggca |
7123597 |
T |
|
| Q |
101 |
tttaagaggttgaatagtttgattcttc |
128 |
Q |
| |
|
||||||||||| || | |||||| |||| |
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| T |
7123596 |
tttaagaggttaaaaaatttgatacttc |
7123569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7175081 - 7174960
Alignment:
| Q |
1 |
atttccaaattctttgaattttccagcattaacctacttgtttttagggtcctttgactttggtgtggacgatgatggccgtgttgagcctttttcagca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| |||||| |||| | ||| | |||| ||| || ||||||||||||||| |||||||| || | |
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| T |
7175081 |
atttccaaattctctgaattttccagctttaaccaacttgtctttacattacttagcctttcgtgcgggcgatgatggccgtgtcaagccttttacatta |
7174982 |
T |
|
| Q |
101 |
tttaagaggttgaatagtttga |
122 |
Q |
| |
|
||||| |||||||||||||||| |
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|
| T |
7174981 |
tttaacaggttgaatagtttga |
7174960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13492337 - 13492369
Alignment:
| Q |
1 |
atttccaaattctttgaattttccagcattaac |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
13492337 |
atttccaaattctttgaattttccagcattaac |
13492369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 14288539 - 14288487
Alignment:
| Q |
71 |
gatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttgat |
123 |
Q |
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||||||||||||||||||||||||||| ||| ||| | |||||||| |||||| |
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|
| T |
14288539 |
gatgatggccgtgttgagcctttttcatcatgtaacaagttgaatactttgat |
14288487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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