View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_low_3 (Length: 471)
Name: NF15146_low_3
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 4 - 420
Target Start/End: Original strand, 7140201 - 7140629
Alignment:
| Q |
4 |
cgaaggtgaagaagagagagtgtacctgcgccgaggagaatggtgagctttccgattgagagagccatggtgtgtgaccagtgaacctctgaaactagag |
103 |
Q |
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| T |
7140201 |
cgaaggtgaagaagagagagtgtacctgcgccgaggagaatggtgagctttccgattgagagagccatggtgtgtgaccagtgaacctctgaaactagag |
7140300 |
T |
|
| Q |
104 |
gaacactttctgcttctgcgcgcgctaaaacggtaccgttttagggtttggcgatgtaggattgtgttgtaggtagtgagaatggaaatgaattgaggaa |
203 |
Q |
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| T |
7140301 |
gaacactttcagcttctgcgcgcgctaaaacggtaccgttttagggtttggcgatgaaggattgtgttgtaggtagtgagaatggaaatgaattgatgaa |
7140400 |
T |
|
| Q |
204 |
caagataataataaccacgacgaagaaaccctcggtggctagctaagcttcgtgttactctgttttacgtggttctaccctagttaatggtagaattaaa |
303 |
Q |
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| T |
7140401 |
caagataataataaccacgacgaagaaaccctcggtggctagctaagcttcgtgttactctgttttacgtggttctaccctagttaatggtagaattaaa |
7140500 |
T |
|
| Q |
304 |
tatttttcat-----------nnnnnnntaattgaattaaatgatgggatatcaatagtatattccgtctaacgtgattaggtatgtcaaatata-nnnn |
391 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7140501 |
tatttttcataaaaaaaaaaaaaaaaaaaaattgaattaaatgatgggatatcaatagtatattccgtctaacgtgattaggtatgtcaaaaatattttt |
7140600 |
T |
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| Q |
392 |
nnnncaaaagatcaaaaacaaattgttgg |
420 |
Q |
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||||||||||||||||||||||||| |
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| T |
7140601 |
ttttcaaaagatcaaaaacaaattgttgg |
7140629 |
T |
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