View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_low_30 (Length: 236)
Name: NF15146_low_30
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4195569 - 4195789
Alignment:
| Q |
1 |
ctttctggaggattaatgggtcttctttggattcaaagtggttggattggtcatgattctggtcattatcaggttatggttaaccggaaatggaatcagt |
100 |
Q |
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| T |
4195569 |
ctttctggaggattaatgggtcttctttggattcaaagtggttggattggtcatgattctggtcattatcaggttatggttaaccggaaatggaatcagt |
4195668 |
T |
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| Q |
101 |
ttatgcagattctttctggtaatgttcttgctggtataagcattgaatggtggaaatggaatcataatgcacaccatcttgcttgtaatagtcttgattt |
200 |
Q |
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| T |
4195669 |
ttatgcagattctttctggtaatgttcttgctggtataagcattgaatggtggaaatggaatcataatgcacaccatcttgcttgtaatagtcttgattt |
4195768 |
T |
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| Q |
201 |
tgatcctgatcttcaacattt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
4195769 |
tgatcctgatcttcaacattt |
4195789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 4186564 - 4186757
Alignment:
| Q |
28 |
tggattcaaagtggttggattggtcatgattctggtcattatcaggttatggttaaccggaaatggaatcagtttatgcagattctttctggtaatgttc |
127 |
Q |
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| T |
4186564 |
tggattcaaagtggttggattagtcatgattcttgtcactatcagattatggcgaactgtaattggaactggtttgttcagatcctttctggaaattttc |
4186663 |
T |
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| Q |
128 |
ttgctggtataagcattgaatggtggaaatggaatcataatgcacaccatcttgcttgtaatagtcttgattttgatcctgatcttcaacattt |
221 |
Q |
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| T |
4186664 |
tttctagtataagcatggagtggtggaaatggaaccacaatgcacaccaccttgcttgtaatagtcttgattttgaccctgaccttcaacattt |
4186757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 24417427 - 24417348
Alignment:
| Q |
131 |
ctggtataagcattgaatggtggaaatggaatcataatgcacaccatcttgcttgtaatagtcttgattttgatcctgat |
210 |
Q |
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|||||||||| |||| ||||||||||||| ||||||||| || ||| ||||||| ||||||||||||| |||||||||| |
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| T |
24417427 |
ctggtataagtattgcttggtggaaatggactcataatgctcatcatattgcttgcaatagtcttgattatgatcctgat |
24417348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 24417512 - 24417480
Alignment:
| Q |
46 |
attggtcatgattctggtcattatcaggttatg |
78 |
Q |
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| T |
24417512 |
attggtcatgattctggtcattatgaggttatg |
24417480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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