View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15146_low_31 (Length: 235)
Name: NF15146_low_31
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_low_31 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 208439 - 208229
Alignment:
| Q |
11 |
gagagagaagaaaatattggatatagaaacggctaagctttcaacttcactttcaaagaacagaaccccataaaaacgcacacagatggggcagtataat |
110 |
Q |
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| T |
208439 |
gagagagaagaaaatattggatatagaaacggctaagctttcaacttcactttcaaagaacagaaccccataaaaacgcacacagatggggcagtataat |
208340 |
T |
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| Q |
111 |
aagtgaatggttcttctactgctccttctgcaaaacaaggcggtggtttggcttttgtagtaataaatacaccaaataagccattgtgtttgtttgtttt |
210 |
Q |
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| T |
208339 |
aagtgaatggttcttctactgctccttctgcaaaacaaggcggtggtttggcttttgtagtaataaatacaccaaataagccattgtgtttgtttgtttt |
208240 |
T |
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| Q |
211 |
agtggaaactg |
221 |
Q |
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| T |
208239 |
agtggaaactg |
208229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 14608938 - 14609148
Alignment:
| Q |
11 |
gagagagaagaaaatattggatatagaaacggctaagctttcaacttcactttcaaagaacagaaccccataaaaacgcacacagatggggcagtataat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14608938 |
gagagagaagaaaatattggatatagaaacggctaagctttcaacttcactttcaaagaacagaaccccataaaaacgcacacagatggggcagtataat |
14609037 |
T |
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| Q |
111 |
aagtgaatggttcttctactgctccttctgcaaaacaaggcggtggtttggcttttgtagtaataaatacaccaaataagccattgtgtttgtttgtttt |
210 |
Q |
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| T |
14609038 |
aagtgaatggttcttctactgctccttctgcaaaacaaggcggtggtttggcttttgtagtaataaatacaccaaataagccattgtgtttgtttgtttt |
14609137 |
T |
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| Q |
211 |
agtggaaactg |
221 |
Q |
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| T |
14609138 |
agtggaaactg |
14609148 |
T |
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