View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15146_low_6 (Length: 415)

Name: NF15146_low_6
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15146_low_6
NF15146_low_6
[»] chr3 (12 HSPs)
chr3 (10-398)||(25795353-25795735)
chr3 (9-43)||(3328487-3328521)
chr3 (9-43)||(3716133-3716167)
chr3 (9-43)||(26298910-26298944)
chr3 (9-43)||(40592914-40592948)
chr3 (149-234)||(15072711-15072796)
chr3 (9-41)||(8370618-8370650)
chr3 (9-41)||(27026869-27026901)
chr3 (9-41)||(27038214-27038246)
chr3 (56-88)||(28531019-28531051)
chr3 (9-41)||(35925406-35925438)
chr3 (9-41)||(48438138-48438170)
[»] scaffold0488 (1 HSPs)
scaffold0488 (173-236)||(2356-2419)
[»] chr1 (10 HSPs)
chr1 (9-43)||(47098965-47098999)
chr1 (9-43)||(47102982-47103016)
chr1 (11-43)||(32889360-32889392)
chr1 (9-43)||(775594-775628)
chr1 (9-43)||(19072849-19072883)
chr1 (9-43)||(19120739-19120773)
chr1 (9-43)||(27104513-27104547)
chr1 (9-43)||(47704077-47704111)
chr1 (206-259)||(22166118-22166171)
chr1 (9-41)||(29651735-29651767)
[»] chr8 (4 HSPs)
chr8 (47-84)||(11492038-11492075)
chr8 (9-48)||(9765961-9766000)
chr8 (9-43)||(26403371-26403405)
chr8 (55-84)||(33727838-33727867)
[»] chr6 (7 HSPs)
chr6 (7-43)||(5572735-5572771)
chr6 (9-43)||(4629875-4629909)
chr6 (9-43)||(10077306-10077340)
chr6 (9-41)||(5017609-5017641)
chr6 (9-41)||(18232769-18232801)
chr6 (9-41)||(22963624-22963656)
chr6 (9-41)||(23824737-23824769)
[»] scaffold0148 (1 HSPs)
scaffold0148 (9-43)||(10651-10685)
[»] chr7 (3 HSPs)
chr7 (9-43)||(4796808-4796842)
chr7 (9-43)||(20284011-20284045)
chr7 (9-43)||(29159725-29159759)
[»] chr5 (5 HSPs)
chr5 (9-43)||(19588668-19588702)
chr5 (9-43)||(31300737-31300771)
chr5 (9-42)||(28832182-28832215)
chr5 (9-41)||(12084317-12084349)
chr5 (56-84)||(32670593-32670621)
[»] chr4 (4 HSPs)
chr4 (9-43)||(25862163-25862197)
chr4 (9-41)||(5269332-5269364)
chr4 (9-41)||(10047303-10047335)
chr4 (9-41)||(54867108-54867140)
[»] chr2 (10 HSPs)
chr2 (9-43)||(8039982-8040016)
chr2 (9-43)||(14699135-14699169)
chr2 (9-43)||(31055964-31055998)
chr2 (9-43)||(33118058-33118092)
chr2 (9-43)||(34682475-34682509)
chr2 (55-84)||(21195641-21195670)
chr2 (9-41)||(8390290-8390322)
chr2 (9-41)||(17865127-17865159)
chr2 (9-41)||(20522144-20522176)
chr2 (9-41)||(23078612-23078644)
[»] scaffold0101 (1 HSPs)
scaffold0101 (51-80)||(43301-43330)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 398
Target Start/End: Complemental strand, 25795735 - 25795353
Alignment:
Q  10 attatacttgtggtgttgctctacacttagattttggttctcttcagtgtcaatttggatgggctaatttagcttattcnnnnnnnnnnnnntaataagt 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||              || ||||    
T  25795735 attatgcttgtggtgttgctctacacttagattttggttctcttcggtgtcaatttggatgggctaatttagcttattcaaaaaaaaaaa---aaaaagt 25795639  T
Q  110 agaaggaaatttgtaaaatctagccagggttcaagtatcaaaacaatgtcaggtttgtgtaacttaatcaacctcttgagagccaatcttgaagtggaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25795638 agaaggaaatttgtaaaatctagccagggttcaagtatcaaaacaatgtcaggtttgtgtaacttaatcaacctcttgagagccaatcttgaagtggaat 25795539  T
Q  210 tggctatacccctaatgttccagtaaattcacttcatttgaatggcttaggagtactaggttttgacttag-tccatagctgccactaactggtgcaatt 308  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||        
T  25795538 tggctatacccctgatgttccagtaaattcacttcatttgaatggcttaggagtactaggttttgacttagttccatagctgcctctaaatggtgc---- 25795443  T
Q  309 aatgttttgtttatgagttttcttcgttaatcagcgagtaaccaaatggaagctaaaagcttctaaatttctttgttcctccctcatcat 398  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25795442 aatgttttgtttctgagttttcttcgttgatcagcgagtaaccaaatggaagctaaaagcttctaaatttctttgttcctccctcatcat 25795353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 3328487 - 3328521
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  3328487 gattatgcttgtggtgttgctctacacttagattt 3328521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 3716133 - 3716167
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  3716133 gattatgcttgtggtgttgctctacacttagattt 3716167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 26298944 - 26298910
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  26298944 gattatgcttgtggtgttgctctacacttagattt 26298910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 40592914 - 40592948
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  40592914 gattatgcttgtggtgttgctctacacttagattt 40592948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 15072796 - 15072711
Alignment:
Q  149 aaaacaatgtcaggtttgtgtaacttaatcaacctcttgagagccaatcttgaagtggaattggctatacccctaatgttccagta 234  Q
    ||||||| |||||| ||||| |  || || ||||| |||||||||||||| || | |||||||||||| ||||| || ||||||||    
T  15072796 aaaacaaagtcagggttgtgaagttttattaaccttttgagagccaatctagagggggaattggctattccccttatattccagta 15072711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 8370618 - 8370650
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  8370618 gattatgcttgtggtgttgctctacacttagat 8370650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 27026901 - 27026869
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  27026901 gattatgcttgtggtgttgctctacacttagat 27026869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 27038246 - 27038214
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  27038246 gattatgcttgtggtgttgctctacacttagat 27038214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 28531051 - 28531019
Alignment:
Q  56 gtgtcaatttggatgggctaatttagcttattc 88  Q
    |||||||||||| ||||||||||||||||||||    
T  28531051 gtgtcaatttgggtgggctaatttagcttattc 28531019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 35925438 - 35925406
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  35925438 gattatgcttgtggtgttgctctacacttagat 35925406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 48438170 - 48438138
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  48438170 gattatgcttgtggtgttgctctacacttagat 48438138  T

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Target: scaffold0488 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 2356 - 2419
Alignment:
Q  173 ttaatcaacctcttgagagccaatcttgaagtggaattggctatacccctaatgttccagtaaa 236  Q
    ||||||||||| ||||||||||||||||| | |||||||||||| ||||| || ||||| ||||    
T  2356 ttaatcaaccttttgagagccaatcttgagggggaattggctattccccttatattccaataaa 2419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 47098965 - 47098999
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||||||||||||||||||||||||||||||||    
T  47098965 gattatacttgtggtgttgctctacacttagattt 47098999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 47102982 - 47103016
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||||||||||||||||||||||||||||||||    
T  47102982 gattatacttgtggtgttgctctacacttagattt 47103016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 32889392 - 32889360
Alignment:
Q  11 ttatacttgtggtgttgctctacacttagattt 43  Q
    |||||||||||||||||||||||||||||||||    
T  32889392 ttatacttgtggtgttgctctacacttagattt 32889360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 775628 - 775594
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  775628 gattatgcttgtggtgttgctctacacttagattt 775594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 19072883 - 19072849
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  19072883 gattatgcttgtggtgttgctctacacttagattt 19072849  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 19120773 - 19120739
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  19120773 gattatgcttgtggtgttgctctacacttagattt 19120739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 27104513 - 27104547
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  27104513 gattatgcttgtggtgttgctctacacttagattt 27104547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 47704077 - 47704111
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    ||||| |||||||||||||||||||||||||||||    
T  47704077 gattaaacttgtggtgttgctctacacttagattt 47704111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 22166118 - 22166171
Alignment:
Q  206 gaattggctatacccctaatgttccagtaaattcacttcatttgaatggcttag 259  Q
    ||||| |||| |||||||| |||||||||||  ||||||||||||| |||||||    
T  22166118 gaattagctaaacccctaaggttccagtaaaagcacttcatttgaagggcttag 22166171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 29651767 - 29651735
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  29651767 gattatgcttgtggtgttgctctacacttagat 29651735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 11492075 - 11492038
Alignment:
Q  47 ttctcttcagtgtcaatttggatgggctaatttagctt 84  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  11492075 ttctcttcagtgtcaatttgggtgggctaatttagctt 11492038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 9765961 - 9766000
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattttggtt 48  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  9765961 gattatgcttgtggtgttgctctacacttagatttaggtt 9766000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 26403371 - 26403405
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  26403371 gattatgcttgtggtgttgctctacacttagattt 26403405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 33727867 - 33727838
Alignment:
Q  55 agtgtcaatttggatgggctaatttagctt 84  Q
    ||||||||||||||||||||||||||||||    
T  33727867 agtgtcaatttggatgggctaatttagctt 33727838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 5572735 - 5572771
Alignment:
Q  7 tagattatacttgtggtgttgctctacacttagattt 43  Q
    |||||||| ||||||||||||||||||||||||||||    
T  5572735 tagattatgcttgtggtgttgctctacacttagattt 5572771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 4629909 - 4629875
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  4629909 gattatgcttgtggtgttgctctacacttagattt 4629875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 10077306 - 10077340
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  10077306 gattatgcttgtggtgttgctctacacttagattt 10077340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 5017609 - 5017641
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  5017609 gattatgcttgtggtgttgctctacacttagat 5017641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 18232801 - 18232769
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  18232801 gattatgcttgtggtgttgctctacacttagat 18232769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 22963656 - 22963624
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  22963656 gattatgcttgtggtgttgctctacacttagat 22963624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 23824737 - 23824769
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  23824737 gattatgcttgtggtgttgctctacacttagat 23824769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 10685 - 10651
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  10685 gattatgcttgtggtgttgctctacacttagattt 10651  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 4796808 - 4796842
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  4796808 gattatgcttgtggtgttgctctacacttagattt 4796842  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 20284045 - 20284011
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  20284045 gattatgcttgtggtgttgctctacacttagattt 20284011  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 29159759 - 29159725
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  29159759 gattatgcttgtggtgttgctctacacttagattt 29159725  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 19588702 - 19588668
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  19588702 gattatgcttgtggtgttgctctacacttagattt 19588668  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 31300737 - 31300771
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    ||||| |||||||||||||||||||||||||||||    
T  31300737 gattacacttgtggtgttgctctacacttagattt 31300771  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 28832215 - 28832182
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagatt 42  Q
    |||||| |||||||||||||||||||||||||||    
T  28832215 gattatgcttgtggtgttgctctacacttagatt 28832182  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 12084317 - 12084349
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  12084317 gattatgcttgtggtgttgctctacacttagat 12084349  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 32670621 - 32670593
Alignment:
Q  56 gtgtcaatttggatgggctaatttagctt 84  Q
    |||||||||||||||||||||||||||||    
T  32670621 gtgtcaatttggatgggctaatttagctt 32670593  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 25862163 - 25862197
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  25862163 gattatgcttgtggtgttgctctacacttagattt 25862197  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 5269332 - 5269364
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  5269332 gattatgcttgtggtgttgctctacacttagat 5269364  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 10047335 - 10047303
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  10047335 gattatgcttgtggtgttgctctacacttagat 10047303  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 54867140 - 54867108
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  54867140 gattatgcttgtggtgttgctctacacttagat 54867108  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 8040016 - 8039982
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  8040016 gattatgcttgtggtgttgctctacacttagattt 8039982  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 14699135 - 14699169
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  14699135 gattatgcttgtggtgttgctctacacttagattt 14699169  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 31055998 - 31055964
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  31055998 gattatgcttgtggtgttgctctacacttagattt 31055964  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 33118092 - 33118058
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  33118092 gattatgcttgtggtgttgctctacacttagattt 33118058  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 34682475 - 34682509
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagattt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  34682475 gattatgcttgtggtgttgctctacacttagattt 34682509  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 21195670 - 21195641
Alignment:
Q  55 agtgtcaatttggatgggctaatttagctt 84  Q
    ||||||||||||||||||||||||||||||    
T  21195670 agtgtcaatttggatgggctaatttagctt 21195641  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 8390290 - 8390322
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  8390290 gattatgcttgtggtgttgctctacacttagat 8390322  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 17865159 - 17865127
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  17865159 gattatgcttgtggtgttgctctacacttagat 17865127  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 20522176 - 20522144
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  20522176 gattatgcttgtggtgttgctctacacttagat 20522144  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 23078612 - 23078644
Alignment:
Q  9 gattatacttgtggtgttgctctacacttagat 41  Q
    |||||| ||||||||||||||||||||||||||    
T  23078612 gattatgcttgtggtgttgctctacacttagat 23078644  T

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Target: scaffold0101 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 43330 - 43301
Alignment:
Q  51 cttcagtgtcaatttggatgggctaattta 80  Q
    ||||||||||||||||||||||||||||||    
T  43330 cttcagtgtcaatttggatgggctaattta 43301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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