View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15146_low_8 (Length: 392)
Name: NF15146_low_8
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15146_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 24741104 - 24740725
Alignment:
| Q |
7 |
gtagtattatcaatttcctatttgagggtgatttttccgttcaactatttatttgattgagcggtcttttgannnnnnnnnnn--aaattgacttttccc |
104 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24741104 |
gtagtattatcaatttcctgtttgagggtgctttttccgttcaactatttatttgattgagcggtcttttgatttatttttttttaaattgacttttccc |
24741005 |
T |
|
| Q |
105 |
aaaaacaattgaaataaacgtgttcaaggtgccatttattttctctaatttcctgttagacttgaaatgtgacctgaaattcaatggatgtaaataatgt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24741004 |
aaaaacaattgaaataaacgtgttcaaggagccatttattttctctaatttcctgttagacttgaaatgtgacctgaaattcaatggatgtaaataatgt |
24740905 |
T |
|
| Q |
205 |
tataaatttgatgttaaaatttatatgttcatcataaaac--ataattgaatttaaagcagtggtttctctaatttctttggaacggcgaatttctaaag |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24740904 |
tataaatttgatgttaaaatttatatgttcatcataaaacatataattgaatataaagca-tggtttctctaatttctttggaactacgaatttctaaag |
24740806 |
T |
|
| Q |
303 |
caaccgttgtgttcaatatattataactcctaaaagcagtcaaataaagtataacccaattaatatatgaattgtatgcct |
383 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24740805 |
caactgttgtgttcaatatattataactcctaaaagcagtcaaataaagtataacccaattaatatatgaattgtatgcct |
24740725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 41210899 - 41210971
Alignment:
| Q |
309 |
ttgtgttcaat--atattataactcctaaaagcagtcaaataaagtataacccaattaatatatgaattgtat |
379 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41210899 |
ttgtgttcaattaataatataactcctaaaagcagtcaaataaagtagaacccaattaatatatgaattgtat |
41210971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 41210575 - 41210651
Alignment:
| Q |
234 |
catcataaaacata--attgaatttaaagcagtggtttctctaatttctttggaacggcgaatttctaaagcaaccgttg |
311 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
41210575 |
catcataaaacatataattgaatataaagcagt---ttctctaatttctctggaactacgaatttctaaagcaactgttg |
41210651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 42955285 - 42955367
Alignment:
| Q |
90 |
aaattgacttttcccaaaaacaattgaaataaacgtgttcaaggtgc-catttattttctctaatttcctgttagacttgaaa |
171 |
Q |
| |
|
||||||||||| ||| |||| |||||||| ||| || |||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
42955285 |
aaattgactttcccccaaaagaattgaaacaaatgtcttcaaggtgctcattatttttctctaatttcctgttagacttgaaa |
42955367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 24548979 - 24548935
Alignment:
| Q |
182 |
aattcaatggatgtaaataatgttataaatttgatgttaaaattt |
226 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24548979 |
aattcaatggatgcaaataatgttataaatttgatgttaaaattt |
24548935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University