View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15146_low_9 (Length: 384)

Name: NF15146_low_9
Description: NF15146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15146_low_9
NF15146_low_9
[»] chr1 (1 HSPs)
chr1 (13-367)||(46214945-46215299)
[»] chr3 (1 HSPs)
chr3 (237-364)||(366714-366841)
[»] chr6 (1 HSPs)
chr6 (157-249)||(18202973-18203065)
[»] chr8 (1 HSPs)
chr8 (238-292)||(7523866-7523920)
[»] chr5 (4 HSPs)
chr5 (330-366)||(3215775-3215811)
chr5 (330-366)||(3219281-3219317)
chr5 (326-358)||(3207847-3207879)
chr5 (312-360)||(23041957-23042005)
[»] chr4 (4 HSPs)
chr4 (312-360)||(42742403-42742451)
chr4 (312-360)||(42751762-42751810)
chr4 (312-360)||(42761224-42761272)
chr4 (312-360)||(42736248-42736296)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 13 - 367
Target Start/End: Original strand, 46214945 - 46215299
Alignment:
Q  13 aatatgtgttaacaactaaaaaagctacagctacattagcttttcataacacaagattaggaattagaccatctcctatagtagcagcattttcatcaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46214945 aatatgtgttaacaactaaaaaagctacagctacattagcttttcataacacaagattaggaattagaccatctcctatagtagcagcattttcatcaag 46215044  T
Q  113 agggccaagtttactcacacttgaaattctaaaacctgatatagtagcacctggtgtgaacattcttgctgcttggagtggacttactggtccatcaagt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215045 agggccaagtttactcacacttgaaattctaaaacctgatatagtagcacctggtgtgaacattcttgctgcttggagtggacttactggtccatcaagt 46215144  T
Q  213 ttaccaatagatcatagaagggttaagtttaacatactttccggaacttcgatgtcatgtcctcatgtaagtggaatcgcggctatgatcaaagctaaac 312  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215145 ttaccaatagatcatagaagggttaagtttaacatactctccggaacttcgatgtcatgtcctcatgtaagtggaatcgcggctatgatcaaagctaaac 46215244  T
Q  313 atcctgaatggagtccagctgctataaaatcagcaatcatgacaacagcttatgt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215245 atcctgaatggagtccagctgctataaaatcagcaatcatgacaacagcttatgt 46215299  T

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Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 237 - 364
Target Start/End: Complemental strand, 366841 - 366714
Alignment:
Q  237 aagtttaacatactttccggaacttcgatgtcatgtcctcatgtaagtggaatcgcggctatgatcaaagctaaacatcctgaatggagtccagctgcta 336  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||| | ||||||||||||||| |||    
T  366841 aagtttaacatgttttccggaacttcaatgtcatgtcctcatgtaagtggaatcgcgaaaatgatcaaagctaaacataccgaatggagtccagctacta 366742  T
Q  337 taaaatcagcaatcatgacaacagctta 364  Q
    |||||||   ||||||||||||| ||||    
T  366741 taaaatctttaatcatgacaacaactta 366714  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 18202973 - 18203065
Alignment:
Q  157 tagcacctggtgtgaacattcttgctgcttggagtggacttactggtccatcaagtttaccaatagatcatagaagggttaagtttaacatac 249  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| || | |||||| |||  | |||||||||||||    
T  18202973 tagcacctggtgtgaacattcttgcagtttggagtggacttaatggtccatcaagtttactaacatatcataaaagaatgaagtttaacatac 18203065  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 7523920 - 7523866
Alignment:
Q  238 agtttaacatactttccggaacttcgatgtcatgtcctcatgtaagtggaatcgc 292  Q
    ||||||||||| |||| || ||||| ||||||||||||||||| |||||||||||    
T  7523920 agtttaacataatttcaggtacttctatgtcatgtcctcatgttagtggaatcgc 7523866  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 3215811 - 3215775
Alignment:
Q  330 gctgctataaaatcagcaatcatgacaacagcttatg 366  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3215811 gctgctataaaatcagcaatcatgacaactgcttatg 3215775  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 3219317 - 3219281
Alignment:
Q  330 gctgctataaaatcagcaatcatgacaacagcttatg 366  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3219317 gctgctataaaatcagcaatcatgacaactgcttatg 3219281  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 3207879 - 3207847
Alignment:
Q  326 tccagctgctataaaatcagcaatcatgacaac 358  Q
    |||||||||||||||||| ||||||||||||||    
T  3207879 tccagctgctataaaatccgcaatcatgacaac 3207847  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 23041957 - 23042005
Alignment:
Q  312 catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag 360  Q
    |||||||| ||||||||||||| ||| || |||||||||||||| ||||    
T  23041957 catcctgattggagtccagctgttatcaagtcagcaatcatgactacag 23042005  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 42742451 - 42742403
Alignment:
Q  312 catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag 360  Q
    |||||||| ||||||||||||||||| || |||||||||||||| ||||    
T  42742451 catcctgattggagtccagctgctatcaagtcagcaatcatgactacag 42742403  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 42751810 - 42751762
Alignment:
Q  312 catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag 360  Q
    |||||||| ||||||||||||||||| || |||||||||||||| ||||    
T  42751810 catcctgattggagtccagctgctatcaagtcagcaatcatgactacag 42751762  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 42761272 - 42761224
Alignment:
Q  312 catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag 360  Q
    |||||||| ||||||||||||||||| || |||||||||||||| ||||    
T  42761272 catcctgattggagtccagctgctatcaagtcagcaatcatgactacag 42761224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 42736248 - 42736296
Alignment:
Q  312 catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag 360  Q
    |||||||| ||||||||||| ||||| || |||||||||||||| ||||    
T  42736248 catcctgattggagtccagcagctatcaagtcagcaatcatgaccacag 42736296  T

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