View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15148_high_10 (Length: 423)

Name: NF15148_high_10
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15148_high_10
NF15148_high_10
[»] chr4 (3 HSPs)
chr4 (78-402)||(55907344-55907668)
chr4 (1-53)||(55907258-55907310)
chr4 (260-394)||(532813-532947)
[»] chr2 (4 HSPs)
chr2 (78-402)||(1036086-1036410)
chr2 (220-402)||(1036422-1036604)
chr2 (1-53)||(1036000-1036052)
chr2 (164-215)||(44575173-44575224)
[»] chr5 (1 HSPs)
chr5 (165-233)||(41900247-41900315)
[»] chr6 (1 HSPs)
chr6 (163-216)||(6403848-6403901)
[»] chr3 (1 HSPs)
chr3 (168-233)||(513428-513493)
[»] chr7 (2 HSPs)
chr7 (187-227)||(10168825-10168865)
chr7 (187-227)||(10176350-10176390)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 78 - 402
Target Start/End: Original strand, 55907344 - 55907668
Alignment:
Q  78 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907344 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 55907443  T
Q  178 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907444 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 55907543  T
Q  278 aaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgct 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907544 aaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgct 55907643  T
Q  378 caatctctccaaccaacctatcatc 402  Q
    |||||||||||||||||||||||||    
T  55907644 caatctctccaaccaacctatcatc 55907668  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 55907258 - 55907310
Alignment:
Q  1 agaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac 53  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55907258 agaagaagaacaacaacaatgaggttgagtaaactggttgctttcagaaacac 55907310  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 394
Target Start/End: Complemental strand, 532947 - 532813
Alignment:
Q  260 tcctccctcgtctcttccaaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgccaaataccttttcc 359  Q
    |||||||||| |||||||  || |||||| || | |||| |||||| ||||    ||||||||||||||||||    |||||||||||||||  ||||||    
T  532947 tcctccctcgcctcttccgtagattcaccaacctcacctcccttgaccttacaagctacaacggtgacctcaataggcttctctgccaaatatattttcc 532848  T
Q  360 attaaatatcacttcgctcaatctctccaaccaac 394  Q
     || ||  |||| || ||||||||||| |||||||    
T  532847 cttcaaactcacatcactcaatctctctaaccaac 532813  T

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Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 78 - 402
Target Start/End: Original strand, 1036086 - 1036410
Alignment:
Q  78 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1036086 cacaactgtgacagctgtaaataattgttatttatctgataattgttcggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct 1036185  T
Q  178 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1036186 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttcc 1036285  T
Q  278 aaaggttcacctacattacctaccttgatcttagttcctacaacggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgct 377  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1036286 aaaggttcaccaacattacctaccttgatcttagttcctacaacggtgacctcaacgcgcttctctgccaaataccttttccattaaatatcacttcgct 1036385  T
Q  378 caatctctccaaccaacctatcatc 402  Q
    |||||||||||||||||||||||||    
T  1036386 caatctctccaaccaacctatcatc 1036410  T

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Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 220 - 402
Target Start/End: Original strand, 1036422 - 1036604
Alignment:
Q  220 cttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcacctacattacctaccttgatcttagttcctaca 319  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1036422 cttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcaccaacattacctaccttgatcttagttcctaca 1036521  T
Q  320 acggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatc 402  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036522 acggtgacctcaacgcgcttctctaccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatc 1036604  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1036000 - 1036052
Alignment:
Q  1 agaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac 53  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1036000 agaagaagaagaacaacaatgaggttgaataaactggttgctttcagaaacac 1036052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 44575173 - 44575224
Alignment:
Q  164 gctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaa 215  Q
    |||||||||| |||||||| | |||||| ||||||||||||||| |||||||    
T  44575173 gctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaa 44575224  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 41900247 - 41900315
Alignment:
Q  165 ctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 233  Q
    |||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||    
T  41900247 ctacttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctct 41900315  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 6403901 - 6403848
Alignment:
Q  163 cgctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaac 216  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||  ||||||||    
T  6403901 cgctacttgaaatctctctcagccgtatccaaacagttcctctctatcaccaac 6403848  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 513428 - 513493
Alignment:
Q  168 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 233  Q
    |||||||||||||||  ||||||| |||||||| |||||  ||||||||| ||| |||||||||||    
T  513428 cttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 10168825 - 10168865
Alignment:
Q  187 gtctccaaacagtttctctcagtcaccaacactcttcgatt 227  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10168825 gtctccaaacagttcctctccatcaccaacactcttcgatt 10168865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 10176350 - 10176390
Alignment:
Q  187 gtctccaaacagtttctctcagtcaccaacactcttcgatt 227  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10176350 gtctccaaacagttcctctccatcaccaacactcttcgatt 10176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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