View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_high_12 (Length: 404)
Name: NF15148_high_12
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 54184169 - 54183800
Alignment:
| Q |
15 |
tatcttatcttgtagatattcttacaaattattcaccactcattccattactcccccagcaaccataattttctttttctcaagatattaaccactcatt |
114 |
Q |
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| T |
54184169 |
tatcttatcttgtagatattcttacaaattattcaccactcattccattactcccccagcaaccataattttctttttctcaagatattaaccactcatt |
54184070 |
T |
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| Q |
115 |
catcaaccataattttcattgtgaatataataaacactcagcaaagagttgtttttcagcttggttgcatctatagctatggccactcatgcagctttag |
214 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54184069 |
catcaaccagaattttcattgtgaatataataaacactcagcaaagagttgtttttcagcttggttgcatctatagctatggccactcatgcagctttag |
54183970 |
T |
|
| Q |
215 |
cttctacaagaatccctacaagcacaaggtttccatcaaaggcctcccactctttcccaactcaatgtgcctcaaaggtttcactctctctaaagttgtg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54183969 |
cttctacaagaatccctacaagcacaaggtttccatcaaaggcctcccactctttcccaactcaatgtgcctcaaaggtttcactctctctaaagttgtg |
54183870 |
T |
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| Q |
315 |
tccttcatgattgcttttgtttcatattttaattaaaagtgtcttatacttcactttactttgcttgtgca |
385 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54183869 |
tccttcatgattgc-tttgtttcatattttaattaaaagtgtcttatacttcactttactttgcttgtgca |
54183800 |
T |
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