View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_high_18 (Length: 324)
Name: NF15148_high_18
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 3284985 - 3285285
Alignment:
| Q |
11 |
cataggaatcatggtttaaggaaccaatgtgtttggagtagatgcacttagactaaaactaaatgctctgtatatagtgatggcatgaacccactttcct |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3284985 |
cataggaatcatggtttaaggaaccaatgtgtttggagtagatgcacttagactaaaactaaatgctctgtatattgtgatggcatgaacccactttcct |
3285084 |
T |
|
| Q |
111 |
tctcacactcctcagcaccagctcaacaaagcacatacttttaatagattggtcgaccaagaaaaagaaaattgctttagatgtcggcaattcaagttgc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3285085 |
tctcacactcctcagcaccagctcaacaaagcacatacttttaatagataggtcgaccaagaaaaagaaaattgctttagatgtcggcaattcaagttgc |
3285184 |
T |
|
| Q |
211 |
aatgatgtg-nnnnnnngtttgttttagaaactcttaataaccgtaaccaatttagtttttgaaattgtagcacattgtttgtcttttttatagacaaat |
309 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3285185 |
aatgatgtgttttttttgtttgttttagaaactcttaataaccgtaaccaatttagtttttgaaattgtagcacattgtttgtcttttttatagacaaat |
3285284 |
T |
|
| Q |
310 |
g |
310 |
Q |
| |
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| |
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| T |
3285285 |
g |
3285285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 3271474 - 3271757
Alignment:
| Q |
11 |
cataggaatcatggtttaaggaaccaatgtgtttggagtagatgcacttagactaaaactaaatgctctgtatatagtgatggcatgaacccactttcct |
110 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
3271474 |
cataggaatcatggtttaaggaaccaatgtgtttggagtagatgcacttagactaagactaaatgctctttatatagtgatggtatgaacccactttcct |
3271573 |
T |
|
| Q |
111 |
tctcacactcctcagcaccagctcaacaaagcacatacttttaatagattggtcgaccaagaaaaagaaaattgctttagatgtcggcaattcaagttgc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3271574 |
tctcacactcctcagcaccagctcaacaaagcacatacttttaatagataggtcgaccaagaaaaagaaaattgctttagatgtcggcaattcaaaccat |
3271673 |
T |
|
| Q |
211 |
aatgatgtgnnnnnnngtttgttttagaaactcttaataaccgtaaccaatttagtttttgaaattgtagcacattgtttgtctttttt |
299 |
Q |
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|||||| || ||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
3271674 |
aatgatatgatt-----tttgttttagaaactactaataaccataatcaatttagtttttgaaattgtagcacatattttgtctttttt |
3271757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 3250895 - 3250934
Alignment:
| Q |
21 |
atggtttaaggaaccaatgtgtttggagtagatgcactta |
60 |
Q |
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| T |
3250895 |
atggtttaaggaaccaatgtgtttggagtgcatgcactta |
3250934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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