View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15148_high_23 (Length: 285)
Name: NF15148_high_23
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 3285008 - 3284732
Alignment:
| Q |
1 |
gttccttaaaccatgattcctatgtgctctactccatataccatgaaccttgataattgcaactgtctaggcaccagaaacaacatctggtcaaggtatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3285008 |
gttccttaaaccatgattcctatgtgctctactccatataccatgaaccttgataattgcaactgtctaggcaccagaaacaacatctggtcaaggtatg |
3284909 |
T |
|
| Q |
101 |
agaaaattggccatgagcctattgtatgtgtcaatgaatttgtcactagaacgaagatgacgaggttgaaaacattgtggaagaagatcaatagacnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3284908 |
agaaaattggccatgagcctattgtatgtgtcaatgaatttgtcactagaactaagatgacgaggttgaaaacattgtggaagaagatcaatagacaaaa |
3284809 |
T |
|
| Q |
201 |
nnngaggagaatttttagatcatcttcacccgtatttttatatgatcgttgttcttacttacaaaactttgatgatg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3284808 |
gaagaggagaatttttagatcatcttcacccgtatttttatatgatcgttgttcttacttacaaaactttgatgatg |
3284732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 3271497 - 3271218
Alignment:
| Q |
1 |
gttccttaaaccatgattcctatgtgctctactccatataccatgaaccttgataattgcaactgtctaggcaccagaaacaaca---tctggtcaaggt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
3271497 |
gttccttaaaccatgattcctatgtgctctactccatataccatgaaccttgaaaattgcaactgtctagacacgagaaacaacaacatctggtcaaggt |
3271398 |
T |
|
| Q |
98 |
atgagaaaattggccatgagcctattgtatgtgtcaatgaatttgtcactagaacgaagatgacgaggttgaaaacattgtggaagaagatcaatagacn |
197 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||||||||| |
|
|
| T |
3271397 |
atgagaaaattggtcatgagcctattgtatatgtcaatgaatttgtcactagatcgaagatggcaaggttgaaaacattgtggatgaagatcaatagaca |
3271298 |
T |
|
| Q |
198 |
nnnnnngaggagaatttttagatcatcttcacccgtatttttatatgatcgttgttcttacttacaaaactttgatgatg |
277 |
Q |
| |
|
|| |||||||||||||||||||||||| || ||| ||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
3271297 |
aaagaagatgagaatttttagatcatcttcacctgtgtttctatatgatcattgctcttatttacaaaactttgatgatg |
3271218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 3257093 - 3256830
Alignment:
| Q |
17 |
ttcctatgtgctctactccatataccatgaaccttgataattgcaactgtctaggcaccagaaacaa---catctggtcaaggtatgagaaaattggcca |
113 |
Q |
| |
|
||||||||| |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||| ||| |||||||| ||||||| ||||||| | |
|
|
| T |
3257093 |
ttcctatgtcctctactccatacaccatggaccttgataattgcaactgtctaggctcaagaaacaactgcatttggtcaagttatgagagaattggcaa |
3256994 |
T |
|
| Q |
114 |
tgagcctattgtatgtgtcaatgaatttgtcactagaacgaagatgacgaggttgaaaacattgtggaagaagatcaatagacnnnnnnngaggagaatt |
213 |
Q |
| |
|
|| ||||||| ||||||||||||| || | | |||| |||||| | || || |||| ||||||||||||||| || | | ||||||||| |
|
|
| T |
3256993 |
cgatcctattgaatgtgtcaatgaacttatggcaagaatgaagatagcaagcttaaaaaaattgtggaagaagattaagaaagaaaagaagaggagaata |
3256894 |
T |
|
| Q |
214 |
tttagatcatcttcacccgtatttttatatgatcgttgttcttacttacaaaactttgatgatg |
277 |
Q |
| |
|
|||||||| | ||||| |||||| |||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
3256893 |
tttagatcgccctcaccagtatttatatatgattctaattcttacttacaaaattttgatgatg |
3256830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 3296086 - 3295919
Alignment:
| Q |
27 |
ctctactccatataccatgaaccttgataattgcaactgtctaggcaccagaaacaac---atctggtcaaggtatgagaaaattggccatgagcctatt |
123 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||||||||||||||| | ||||||||| || ||||||| ||||||| ||||||| |||| |||||| |
|
|
| T |
3296086 |
ctctactccatacaccatggaccttgaaaattgcaactgtctaggctcaagaaacaactgcatttggtcaacttatgagagaattggcaatgatcctatt |
3295987 |
T |
|
| Q |
124 |
gtatgtgtcaatgaatttgtcactagaacgaagatgacgaggttgaaaacattgtggaagaagatcaa |
191 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||| | || ||||||| ||||||||||||||||| |
|
|
| T |
3295986 |
gtatgtgtcaatgaatttatggctagaatgaagatatcaagcttgaaaaatttgtggaagaagatcaa |
3295919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 3290147 - 3289888
Alignment:
| Q |
21 |
tatgtgctctactccatataccatgaaccttgataattgcaactgtctaggcaccagaaacaa---catctggtcaaggtatgagaaaattggccatgag |
117 |
Q |
| |
|
||||| |||||||| |||||||||| | ||||| ||||||||||||||| || | |||||||| ||| |||||||| ||||||| ||||||| |||| |
|
|
| T |
3290147 |
tatgtcctctactctatataccatggaacttgaaaattgcaactgtctaagctcaagaaacaattgcatttggtcaagttatgagagaattggcaatgat |
3290048 |
T |
|
| Q |
118 |
cctattgtatgtgtcaatgaatttgtcactagaacgaagatgacgaggttgaaaacattgtggaagaagatcaatagacnnnnnnngaggagaattttta |
217 |
Q |
| |
|
||||||||||||| |||||| || | | |||| ||||| | || || |||| ||||||||||||||| || | | |||||||||||||| |
|
|
| T |
3290047 |
cctattgtatgtgccaatgagttcatggcaagaataaagatatcaagcttaaaaaaattgtggaagaagataaagaaagcaaagaagaggagaattttta |
3289948 |
T |
|
| Q |
218 |
gatcatcttcacccgtatttttatatgatcgttgttcttacttacaaaactttgatgatg |
277 |
Q |
| |
|
|| |||||| || || ||| ||||||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
3289947 |
gaagatcttcgccggtgtttctatatgatccttgctcttacttacaaaattttgatgatg |
3289888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 3250886 - 3250623
Alignment:
| Q |
17 |
ttcctatgtgctctactccatataccatgaaccttgataattgcaactgtctaggcaccagaaacaacatc---tggtcaaggtatgagaaaattggcca |
113 |
Q |
| |
|
||||||||| || |||||||| || |||| ||||| |||| ||| |||||| |||| |||||| ||| | | |||||| ||||||| | ||||| | |
|
|
| T |
3250886 |
ttcctatgttatcaactccatacactatgagtcttgaaaattacaattgtctaagcacaagaaaccacagcattttgtcaagttatgagagacttggcta |
3250787 |
T |
|
| Q |
114 |
tgagcctattgtatgtgtcaatgaatttgtcactagaacgaagatgacgaggttgaaaacattgtggaagaagatcaatagacnnnnnnngaggagaatt |
213 |
Q |
| |
|
||| ||||||||||||||||||||||| | | |||| |||||| | || |||||||| ||||||| ||||||||| ||| |||||||||| |
|
|
| T |
3250786 |
tgaccctattgtatgtgtcaatgaattcatgagcagaatgaagatagcaagcttgaaaactttgtggaggaagatcaagagagagaaaaagaggagaatt |
3250687 |
T |
|
| Q |
214 |
tttagatcatcttcacccgtatttttatatgatcgttgttcttacttacaaaactttgatgatg |
277 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||| | ||||||||||| || || ||||||| |
|
|
| T |
3250686 |
tttagatcatcttcacctgtgtttatatatgatcctaactcttacttacagaatttcgatgatg |
3250623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 3280226 - 3280103
Alignment:
| Q |
18 |
tcctatgtgctctactccatataccatgaaccttgataattgcaactgtctaggcaccagaaacaa---catctggtcaaggtatgagaaaattggccat |
114 |
Q |
| |
|
|||||| | |||||||| ||| |||||| |||||||||||||||||||||||||| | |||||||| ||| |||||||| ||||||| |||||| | |
|
|
| T |
3280226 |
tcctatatcctctactctatacaccatggaccttgataattgcaactgtctaggctcaagaaacaactgcatttggtcaagttatgagagaattggaaac |
3280127 |
T |
|
| Q |
115 |
gagcctattgtatgtgtcaatgaa |
138 |
Q |
| |
|
|| ||| ||| ||||||||||||| |
|
|
| T |
3280126 |
gatcctgttgaatgtgtcaatgaa |
3280103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University