View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_high_24 (Length: 284)
Name: NF15148_high_24
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 45971470 - 45971729
Alignment:
| Q |
16 |
catattactgatatttgaaattgaataatatcaataaattcgtccctccgttgatatttacaagactataatgacatcaagtttctaatgtgagggatgc |
115 |
Q |
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| T |
45971470 |
catattactgatatttgaaattgaataatatcaataaattcgtccttccgttgatatttacaagactataatgacattaagtttctaatgtgagggatgc |
45971569 |
T |
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| Q |
116 |
atttgaaacaactgaataagttcatacatttatttgataatatagactcacacaatatgacaaacatgattaactttgaattatgttatttgaacatcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45971570 |
atttgaaacaactgaataagttcatacatttatttgataatatagactcacacaatatgacaaacatgattaactttgaattatgttatttgaacatcaa |
45971669 |
T |
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| Q |
216 |
aatacaaataccgtatgtgacatcttatatgtttatctctatctctcatacttttcatct |
275 |
Q |
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| T |
45971670 |
aatacaaataccgtatgtgacatcttatatgtttatctctatctctcatacttttcatct |
45971729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 225
Target Start/End: Complemental strand, 393389 - 393358
Alignment:
| Q |
194 |
aattatgttatttgaacatcaaaatacaaata |
225 |
Q |
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| T |
393389 |
aattatgttatttgaacatcaaaatacaaata |
393358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 35620848 - 35620789
Alignment:
| Q |
200 |
gttatttgaacatcaaaatacaaataccgtatgtgacatcttatatgtttatctctatct |
259 |
Q |
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| T |
35620848 |
gttatttgaacatcaaaatacaactaccatatgtgacaccgtatatgcttatctctatct |
35620789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 17753704 - 17753767
Alignment:
| Q |
199 |
tgttatttgaacatcaaaatacaaataccgtatgtgacatcttatatgtttatctctatctctc |
262 |
Q |
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| T |
17753704 |
tgttatttgaacatcaaaaaacatacgccgtatgtgacaccatatatgtctatctctatctctc |
17753767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 45952773 - 45952811
Alignment:
| Q |
199 |
tgttatttgaacatcaaaatacaaataccgtatgtgaca |
237 |
Q |
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| T |
45952773 |
tgttatttgaacatcaaaatacaaatatcatatgtgaca |
45952811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 26470912 - 26470980
Alignment:
| Q |
194 |
aattatgttatttgaacatcaaaatacaaataccgtatgtgacatcttatatgtttatctctatctctc |
262 |
Q |
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|||| |||||||| |||||||||||||| | | ||||| | | ||| || ||||||||||||||||||| |
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| T |
26470912 |
aattgtgttatttaaacatcaaaatacagacatcgtatataatatcatacatgtttatctctatctctc |
26470980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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