View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15148_high_30 (Length: 237)
Name: NF15148_high_30
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_high_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 15935553 - 15935389
Alignment:
| Q |
12 |
tcatcacatcccttatttgtttctttctaattgttttaggtatcctttacgctggttccgttggattcatatattatggtggcttgcaggtatgtaatgt |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15935553 |
tcatcacaacccttatttgtttctttctaattgttttaggtatcctttacgctggttccgttggattcatatattatggtggcttccaggtatgtaatgt |
15935454 |
T |
|
| Q |
112 |
gcatacatacatacatacatatatcttcaaattccactcaaccctaacagtttattacccttccttgtttt |
182 |
Q |
| |
|
||||||||||| |||| | |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15935453 |
acatacatacat------atatctattcaaattccactcaaccctaacaatttattacccttccttgtttt |
15935389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 15934444 - 15934391
Alignment:
| Q |
184 |
ttctctaaattggttccattatcatctcccaaaaaatcacaaaccattacatat |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15934444 |
ttctctaaattggttccattatcatctcccaaaaaatcacaaaccattacatat |
15934391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 132
Target Start/End: Original strand, 35938528 - 35938557
Alignment:
| Q |
103 |
atgtaatgtgcatacatacatacatacata |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35938528 |
atgtaatgtgcatacatacatacatacata |
35938557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 18421666 - 18421718
Alignment:
| Q |
181 |
ttattctctaaattggttccattatcatctcccaaaaaatcacaaaccattaca |
234 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
18421666 |
ttattttctaaattgattccattatcatctccc-aaaagtcacaaacccttaca |
18421718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University