View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15148_high_4 (Length: 561)
Name: NF15148_high_4
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 454; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 11962387 - 11962928
Alignment:
| Q |
1 |
tttggatcttagctctaatgattttcttggcagccatatttcagaacaaataggctcacttaccaagttaaagtatctcaatctctcaaattctttactt |
100 |
Q |
| |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |
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| T |
11962387 |
tttggatcttagctctaacgattttcctggcagccatatttcagaacaaataggctcacttaccaagttaaagtatctcaatctctcagaatctttacct |
11962486 |
T |
|
| Q |
101 |
ggtgggaggattccttatcaaattggaaaacttttagatcttgaatatctagatctaagttggatgaattatggtacgaatggagaaattccttctcaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| || |||||||| |||||||||| |
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|
| T |
11962487 |
cgtgggaggattccttatcaaattggaaaacttttagagcttgaatatctagatctaagtgggatggtttatggtacaaaaggagaaatcccttctcaac |
11962586 |
T |
|
| Q |
201 |
tcgggaatcttacacgtttacgatatctcaatctaagagataactataatattgttggaaaaatcccttgtcgacttggaaatctctcacaactacagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11962587 |
tcgggaatcttacacgtttacgatatctcaatctaagagataactttaatattgttggagaaatcccttgtcgacttggaaatctctcacaactacagta |
11962686 |
T |
|
| Q |
301 |
ccttgatcttgaaggaacttctcttactggagtaatcccttttcaaccagggaatcttcccgttttacaaactcttaaacttgatgtgtatttggatctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
11962687 |
ccttgatcttgaaggaacttctcttactggagtaatcccttttcaaccagggaatcttcccgttttgcaaactcttaaacttgatgtgtatttggatctt |
11962786 |
T |
|
| Q |
401 |
acaaatgataatataaaatggttttctacactctcttctttaacaagtctttccctgagaggactatatcttagttttgtctcttctcacttgcaaacaa |
500 |
Q |
| |
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||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| |
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|
| T |
11962787 |
acaaatgataatataaaatggttgtatacactgtcttctttaacaagtctttccctgagaggaatgtatcttagttttgactcttctcacttgcaaacaa |
11962886 |
T |
|
| Q |
501 |
tcatgaagttttttccaaacttaagagagttgaggttagttg |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11962887 |
tcatgaagttttttccaaacttaagagagttgaggttagttg |
11962928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 39 - 542
Target Start/End: Complemental strand, 11853126 - 11852617
Alignment:
| Q |
39 |
tttcagaacaaataggctcacttaccaagttaaagtatctcaatctctcaaattctttacttggtgggaggattccttatcaaattggaaaacttttaga |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11853126 |
tttcagaacaaataggctcacttaccaagttaaagtatctcaatttctcaaattcttttgttggtgggaggattccttatcaaattggaaaacttttaga |
11853027 |
T |
|
| Q |
139 |
tcttgaatatctagatctaagttggatgaattatggtacgaatggagaaattccttctcaactcgggaatcttacacgtttacgatatctcaatctaaga |
238 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
11853026 |
tcttgaatatctagatctaagtgagatgttttatggtataaacggagaaatcccttctcaactcgggaatcttacacgtttacgatatctcaacctaaga |
11852927 |
T |
|
| Q |
239 |
gataactataatattgttggaaaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttctcttactggagtaatcc |
338 |
Q |
| |
|
|||||| | |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| | |||||| |
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|
| T |
11852926 |
gataacgaaaatattgttggagaaatcccttgtcaacttagaaatctctcacaactacagtaccttaatcttgaaggaacatctcttactgaactaatcc |
11852827 |
T |
|
| Q |
339 |
cttttcaaccagggaatcttcccgttttacaaactcttaaacttgatgtgtatttggatcttacaaatgataatataaaatggttttctacactctcttc |
438 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
11852826 |
cttttcaaccagggaatcttcccgttttgcaaactcttaaacttgatgtgtattttgatcttacaaatgataatataaaatggttgtctacactctcttc |
11852727 |
T |
|
| Q |
439 |
tttaacaagtctttccctgagaggactatatcttagttttgtctcttctcact------tgcaaacaatcatgaagttttttccaaacttaagagagttg |
532 |
Q |
| |
|
|||||||||||||||||| || |||| ||||| ||| ||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11852726 |
tttaacaagtctttccctcagcggacaatatcgtaggtttgtcttttttcactacttgcagcaaacaatcatgaagtttattccaaacttaagagagttg |
11852627 |
T |
|
| Q |
533 |
aggttagttg |
542 |
Q |
| |
|
|||||||||| |
|
|
| T |
11852626 |
aggttagttg |
11852617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 138 - 542
Target Start/End: Complemental strand, 11833763 - 11833353
Alignment:
| Q |
138 |
atcttgaatatctagatctaagttggatgaattatggtacgaatggagaaattccttctcaactcgggaatcttacacgtttacgatatctcaatctaag |
237 |
Q |
| |
|
|||| |||||||||||||||||| |||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11833763 |
atctagaatatctagatctaagtgagatgttttatggtacaaacggagaaatcccttctcaactcgggaatcttacacgtttacgatatctcaatctaag |
11833664 |
T |
|
| Q |
238 |
agataactataatattgttggaaaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttctcttactggagtaatc |
337 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
11833663 |
agataactataatattgttggagaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttcttttaccggagtaatc |
11833564 |
T |
|
| Q |
338 |
ccttttcaaccagggaatcttcccgttttacaaactcttaaacttgatgtgtatttggatcttacaaatgataatataaaatggttttctacactctctt |
437 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || |||||||||||||||||||||| || | ||| || ||||||||| ||||| ||||||||||||| |
|
|
| T |
11833563 |
ccttttcaaccaggaaatcttcctgttttgcacactcttaaacttgatgtgtattatcatttcacagatagtaatataaagtggttgtctacactctctt |
11833464 |
T |
|
| Q |
438 |
ctttaacaagtctttccctgagaggactatatcttagttttgtctcttctcact------tgcaaacaatcatgaagttttttccaaacttaagagagtt |
531 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||| ||||||| || ||||| | |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11833463 |
ctttaacaagtctttccctgagcggacaatatcgtaggtttgtcttttttcactacttgctccaaacaatcatgaagtttattccaaacttaagagagtt |
11833364 |
T |
|
| Q |
532 |
gaggttagttg |
542 |
Q |
| |
|
||||||||||| |
|
|
| T |
11833363 |
gaggttagttg |
11833353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 11928126 - 11928511
Alignment:
| Q |
1 |
tttggatcttagctctaatgattttcttggcagccatatttcagaacaaataggctcacttaccaagttaaagtatctcaatctctcaaattctttactt |
100 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||||||||||| ||||| |||| |||||||||||| ||||||||| | || |||| || || |
|
|
| T |
11928126 |
tttggatcttagctctaatgtatttcctggcagacatatttcagaacacataggatcacataccaagttaaaatatctcaatttatcgttttctgtattt |
11928225 |
T |
|
| Q |
101 |
ggtgggaggattccttatcaaattggaaaacttttagatcttgaatatctagatctaagttggatgaattatggtacgaatggagaaattccttctcaac |
200 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||| | || || ||| ||||| ||||| | ||||||| |||||||||||| ||| |||||| |
|
|
| T |
11928226 |
cccgggagaattccttatcaaataggaaatcttttatagctagagtatttagatttaagtaaaagtttttatggtttgaatggagaaatacctcctcaac |
11928325 |
T |
|
| Q |
201 |
tcgggaatcttacacgtttacgatatctcaatctaagagataactataatattgttggaaaaatcccttgtcgacttggaaatctctcacaactacagta |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||||||| |||| |||||||||||||| | ||| | |
|
|
| T |
11928326 |
ttgggaatcttacacgtttacgatatctcaatctaagagagaacaccaatattattggtgaaatcccttgtcaacttagaaatctctcacaattgcagca |
11928425 |
T |
|
| Q |
301 |
ccttgatcttgaaggaacttctcttactggagtaatcccttttcaaccagggaatcttcccgttttacaaactcttaaacttgatg |
386 |
Q |
| |
|
||||||||||| | |||||||||| | |||| |||||||||||| ||||||||||| |||| |||||||| ||||| |||| |
|
|
| T |
11928426 |
ccttgatcttggaaaaacttctctttcaggagcaatcccttttcatgttgggaatcttccatttttgcaaactctgaaactcgatg |
11928511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 11833801 - 11833760
Alignment:
| Q |
37 |
tatttcagaacaaataggctcacttaccaagttaaagtatct |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11833801 |
tatttcagaacaaataggctcacttaccaagttaaagtatct |
11833760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 48207317 - 48207369
Alignment:
| Q |
38 |
atttcagaacaaataggctcacttaccaagttaaagtatctcaatctctcaaa |
90 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
48207317 |
atttctgaacacatagactcacttaccaagttaaggtttctcaatctctcaaa |
48207369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 347
Target Start/End: Original strand, 20735779 - 20735874
Alignment:
| Q |
252 |
ttgttggaaaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttctcttactggagtaatcccttttcaac |
347 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || |||||||||| ||| | |||| ||||| ||||||| | |||| |||||||| ||||| |
|
|
| T |
20735779 |
ttgttggagtaatcccttgtgaacttggaaatctagcaaaactacagtatcttaaccttggaggaaattctctttcaggagcaatcccttatcaac |
20735874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 347
Target Start/End: Complemental strand, 20761563 - 20761468
Alignment:
| Q |
252 |
ttgttggaaaaatcccttgtcgacttggaaatctctcacaactacagtaccttgatcttgaaggaacttctcttactggagtaatcccttttcaac |
347 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| || ||||| |||| ||| | |||| ||||| ||||||| | |||| |||||||| ||||| |
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|
| T |
20761563 |
ttgttggagaaatcccttgtgaacttggaaatctagcaaaactagagtatcttaaccttggaggaaattctctttcaggagcaatcccttatcaac |
20761468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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