View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15148_high_6 (Length: 465)
Name: NF15148_high_6
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_high_6 |
 | |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 31095139 - 31094689
Alignment:
| Q |
1 |
tcttgtcaactatatgagtggtgacagttcctctattcctgctaggtctttgatgtttgttgaatacatatgcatttaagaagatcaccaatattaaaag |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31095139 |
tcttgtcaactatatcagtggtgacagttcctctattcctgctaggtctttgatgtttgttgaatacatatgcatttaagaagatcaccaatattaaaag |
31095040 |
T |
|
| Q |
101 |
gatcgtcgacttctgtgacataaccccaatgttgtctccaccttatagagcgttaatactccctacggtcgctgcttttggctgccatttgtaaccccgt |
200 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
31095039 |
gatcgtcggcttctgtgacataaccccaatgctgtctccaccttatagagcgttaatattccatgcggtcgctgcttttggctgccatttgtaaccccgt |
31094940 |
T |
|
| Q |
201 |
cgttgctgcatcttcttcctcgtacgacgccatctctctatttgtgctagttacttaagttgaagacttggaccatataatatgatcatgggaaatacat |
300 |
Q |
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| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31094939 |
cattgctgcatcttcttcctcgtacgacgtcatctctctatttgtgctagttacttaagttgaagacttggaccatataatatgatcatgggaaatacat |
31094840 |
T |
|
| Q |
301 |
aatgtatttaaaatggttttgttaaatgcgaccgcgcttcatgtgcatctaaaaaagtatcatcatcattctaacatattctctgcacaaagaccaa-aa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31094839 |
aatgtatttaaaatggttttgttaaatgcgacggtgcttcatgtgcatctaaaaaagtatcatcatcattctaacatattctctgcacaaagaccaaaaa |
31094740 |
T |
|
| Q |
400 |
aacagctagaaactttggatctggtttgatataaaatgccatgacttaaat |
450 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31094739 |
aatagctagaaactttggatctggtttgatataaaatgccatgacttaaat |
31094689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 83 - 438
Target Start/End: Original strand, 31050259 - 31050615
Alignment:
| Q |
83 |
gatcaccaatattaaaaggatcgtcgacttctgtgacataaccccaatgttgtctccaccttatagagcgttaatactccctacggtcgctgcttttggc |
182 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| || | |||||||||||| | || |
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|
| T |
31050259 |
gatcaccaatattaaaaggatcgtcggcttctgtgacatagccccaatgttgtctccaccttatagggcgttaatatcccatgcggtcgctgcttctagc |
31050358 |
T |
|
| Q |
183 |
tgc-----catttgtaaccccgtcgttgctgcatcttcttcctcgtacgacgccatctctctatttgtgctagttacttaagttgaagacttggaccata |
277 |
Q |
| |
|
||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31050359 |
tgctactgcatttgtaaccccgtcgtcgctgcatcctccaactcgtacgacgccatctctctatttgtgctagttactcaagttgaagacttggaccata |
31050458 |
T |
|
| Q |
278 |
taatatgatcatgggaaatacataatgtatttaaaatggttttgttaaatgcgaccgcgcttcatgtgcatctaaaaaagtatcatcatcattctaacat |
377 |
Q |
| |
|
|| ||||||||| | |||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| |||||| ||||||||||| |
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| T |
31050459 |
tagtatgatcatagttaatacataatgtatttaaaatggttttgttaa-----acagtgcttcatgtgcatctaaaaaaacatcatcgtcattctaacag |
31050553 |
T |
|
| Q |
378 |
attctctgcacaaagaccaaaaaa-cagctagaaactttggatctggtttgatataaaatgc |
438 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
31050554 |
attctcagcacaaagaccaaaaaatcagctagaaactttggatctggtttgatataaaatgc |
31050615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 233 - 364
Target Start/End: Original strand, 31106424 - 31106555
Alignment:
| Q |
233 |
tctctctatttgtgctagttacttaagttgaagacttggaccatataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaatgcgac |
332 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |||||||||||| || |
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|
| T |
31106424 |
tctctctatttgtgcaagtcacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgat |
31106523 |
T |
|
| Q |
333 |
cgcgcttcatgtgcatctaaaaaagtatcatc |
364 |
Q |
| |
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| | ||||||||||||||||||||||||||| |
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| T |
31106524 |
agtgtttcatgtgcatctaaaaaagtatcatc |
31106555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 207 - 313
Target Start/End: Original strand, 31042842 - 31042951
Alignment:
| Q |
207 |
tgcatcttcttcctcgtacgacgccatctctctatttgtgctagttacttaagt---tgaagacttggaccatataatatgatcatgggaaatacataat |
303 |
Q |
| |
|
|||||| ||||||||| ||| | || ||||||||||||||| |||||| |||| | |||||||||||||||||||||||||||| ||||||||| | |
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|
| T |
31042842 |
tgcatcctcttcctcgcacgccaccgtctctctatttgtgcaagttacagaagtaattaaagacttggaccatataatatgatcatgataaatacatact |
31042941 |
T |
|
| Q |
304 |
gtatttaaaa |
313 |
Q |
| |
|
|||| ||||| |
|
|
| T |
31042942 |
gtatctaaaa |
31042951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 31107940 - 31108003
Alignment:
| Q |
6 |
tcaactatatgagtggtgacagttcctctattcctgctaggtctttgatgtttgttgaatacat |
69 |
Q |
| |
|
||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31107940 |
tcaactatatgagtggtgatagtttcatgatttctgctaggtctttgatgtttgttgaatacat |
31108003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 31042649 - 31042703
Alignment:
| Q |
6 |
tcaactatatgagtggtgacagttcctctattcctgctaggtctttgatgtttgt |
60 |
Q |
| |
|
||||||||||||||||||| |||| | ||||| |||||||||||||||| ||||| |
|
|
| T |
31042649 |
tcaactatatgagtggtgatagtttcactatttctgctaggtctttgatatttgt |
31042703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 21181634 - 21181562
Alignment:
| Q |
300 |
taatgtatttaaaatggttttgttaaatgcgaccgcgcttcatgtgcatctaaaaaagtatcatcatcattct |
372 |
Q |
| |
|
||||||||| |||||| || ||||||||| ||| | |||||| ||||||||||||| |||||||| ||||| |
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|
| T |
21181634 |
taatgtattaaaaatgattatgttaaatgtgacaatgtttcatgagcatctaaaaaagcatcatcattattct |
21181562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 3860 - 3406
Alignment:
| Q |
1 |
tcttgtcaactatatgagtggtgacagttcctctattcctgctaggtctttgatgtttgttgaatacatatgcatttaagaagatcaccaatattaaaag |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
3860 |
tcttgtcaagtatatgagtggtgacagttcctctattcctattaggtctttgatgcttgttgaatacatatatatttaagaggattaccaatattaaaag |
3761 |
T |
|
| Q |
101 |
gatcgtcgacttctgtgacataaccccaatgttgtctccaccttatagagcgttaatactccctacggtcgctgcttttggctgc-----catttgtaac |
195 |
Q |
| |
|
||| |||||||| | ||| || |||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
3760 |
gattgtcgacttttacaacactgcctcaatgttgtctccaccttatagggcgttaataccccccgcggtcgctgcttctggctgctaccgcatttgtaac |
3661 |
T |
|
| Q |
196 |
cccgtcgttgctgcatcttcttcctcgtacgacgccatctctctatttgtgctagttacttaagttgaagacttggaccatataatatgatcatgggaaa |
295 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
3660 |
cccgtcgtcgctgcatcctcttcctcatacgacaccatctctccatttgtgctagttactgaagttgaagacttggaccttataatatgatcatgggaaa |
3561 |
T |
|
| Q |
296 |
tacataatgtatttaaaatggttttgttaaatgcgaccgcgcttcatgtgcatctaaaaaagtatcatcatcattctaacatattctctgcacaaagacc |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | | ||||||||||| ||||||||||||||||| ||||||||||| |||||| ||||||||||| |
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|
| T |
3560 |
tacataatgtatttaaaatggttttgttaaatgtggcagtgcttcatgtgcttctaaaaaagtatcatcgtcattctaacagattctcagcacaaagacc |
3461 |
T |
|
| Q |
396 |
aaaaaa-cagctagaaactttggatctggtttgatataaaatgccatgacttaaa |
449 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3460 |
aaaaaagcaggtataaactttggatctggtttgatataaaatgccatgagttaaa |
3406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 65188 - 65272
Alignment:
| Q |
288 |
atgggaaatacataatgtatttaaaatggttttgttaaatgcgaccgcgcttcatgtgcatctaaaaaagtatcatcatcattct |
372 |
Q |
| |
|
|||| ||||| |||||||||||| |||| || ||||||||| || | | ||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
65188 |
atggtaaatatataatgtatttacaatgattatgttaaatgtgatagtgtttcatgtgcatttaaaaaagcatcttcatcattct |
65272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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