View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_high_7 (Length: 445)
Name: NF15148_high_7
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_high_7 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 135 - 430
Target Start/End: Complemental strand, 46223103 - 46222808
Alignment:
| Q |
135 |
aagctcttgagaatactcctccttccaccattctcttactggtcttctcttctcttttttcaaatcaccctttctctttccttcatccattgattcccac |
234 |
Q |
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| T |
46223103 |
aagctcttgagaatactcctccttccaccattctcttactggtcttctcttctcttttttcaaatcaccctttctctttccttcatccattgattcccac |
46223004 |
T |
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| Q |
235 |
cactccaatttcttcttcatcttacttttctctccctttccacttccacccaccaaatcatcattctttgttctttcttccttcacctcttttccaatcc |
334 |
Q |
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| T |
46223003 |
cactccaatttcttcttcatcttacttttctctccctttccacttccacccaccaaatcatcattctttgttctttcttccttcacctcttttccaatcc |
46222904 |
T |
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| Q |
335 |
aatccatcacataatccttcacacttccactcttcttcaatccaacaccaaccatctccctctcatattcctcaaagttagtattaacactctctg |
430 |
Q |
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| T |
46222903 |
aatccatcacataatccttcacacttccactcttcttcaatccaccaccaaccatctccctctcatattcctcaaagctagtattaacactctctg |
46222808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 46223237 - 46223151
Alignment:
| Q |
1 |
cggtttttataactcattttcttcacatcactaccagcatcatgatcatgaacatgatctctctcccatttccaccagttatcacca |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
46223237 |
cggtttttataactcattttcttcacatcactaccagcatcatgatcatgaacatgatctctgtcccatttccaccaattatcacca |
46223151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 356
Target Start/End: Original strand, 227089 - 227119
Alignment:
| Q |
326 |
ttccaatccaatccatcacataatccttcac |
356 |
Q |
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| T |
227089 |
ttccaatccaatccatcacataatccttcac |
227119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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