View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15148_low_10 (Length: 433)

Name: NF15148_low_10
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15148_low_10
NF15148_low_10
[»] chr3 (6 HSPs)
chr3 (22-417)||(36280768-36281165)
chr3 (81-381)||(7129924-7130227)
chr3 (76-371)||(6820615-6820907)
chr3 (88-123)||(48352158-48352193)
chr3 (87-136)||(26955807-26955856)
chr3 (365-393)||(6818197-6818225)
[»] chr4 (2 HSPs)
chr4 (227-383)||(1072450-1072606)
chr4 (81-150)||(1072686-1072755)
[»] chr8 (2 HSPs)
chr8 (22-358)||(33178045-33178381)
chr8 (86-143)||(15038747-15038804)
[»] chr1 (3 HSPs)
chr1 (22-138)||(16305297-16305411)
chr1 (88-123)||(48710362-48710397)
chr1 (87-123)||(13216975-13217011)
[»] chr5 (2 HSPs)
chr5 (88-123)||(27515880-27515915)
chr5 (87-123)||(42918027-42918063)
[»] chr6 (1 HSPs)
chr6 (78-143)||(2845423-2845488)


Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 22 - 417
Target Start/End: Original strand, 36280768 - 36281165
Alignment:
Q  22 atcaactgatccaacctgtaaaaccattggaattaaccgcccaacacagtctctctcaccaacttttcctcccaagcaaataacctcctacgccacttcc 121  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36280768 atcaactgatccaacctgtaaaaccattggagttagccgcccaacacactctctctcaccaactcttcctcccaagcaaataacctcctacgccacttcc 36280867  T
Q  122 acttctcaccgttcaccccccaccccataatgaacacattctctacatttgtcaatttatatcagctaactcgtataatcttctataagt--atctcagg 219  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  36280868 actcctcaccgttcactccccaccccataatgaacacattctctacatttgtcaatttatatcagctaactcgtataatcttctataagtgtatctcagg 36280967  T
Q  220 gacatatcatccaatcaggaatctaacaaaaacaaagtagaattcccatcacacatcttccaactaatattatctctcagccactcaccatccacctgac 319  Q
    | ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36280968 ggcatatcatccaatcagggatctaacaaaaacaaagtaaaattcccatcacacatcttccaactaattttatctctcagccactcaccatccacctgac 36281067  T
Q  320 ccacgccctctctgatacttctcatagtctgccaccacacctacccatcacccctctcaacacacaaccgccccttcctacccctaacaagcacatac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36281068 ccacgccctctctgatacttctcatagtctgccaccacacctacccatcgcccctctcaacacacaaccgccccttcctacccctaacaagcacatac 36281165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 81 - 381
Target Start/End: Original strand, 7129924 - 7130227
Alignment:
Q  81 caacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcaccccccaccccataatgaacacattctctacatttgtcaattta 180  Q
    ||||| ||||||||||| ||| |||||||||| |||||| |||  |||||| ||| | |||||||| ||||| |||| || ||||||| ||| ||||||     
T  7129924 caactcttcctcccaagaaaacaacctcctacaccacttacacgcctcaccattctctccccaccctataataaacatatgctctacaattgccaatttt 7130023  T
Q  181 t-atcagctaactcgtataatcttctataagtatc--tcagggacatatcatccaatcaggaatctaacaaaaacaaagtagaattcccatcacacatct 277  Q
    | ||| |||||||| |||||||||| | || | ||  |||||  |||| || |||| |||| ||||||| |||||| ||||||| || |||||| ||  |    
T  7130024 ttatccgctaactcatataatcttccaaaactctccttcaggagcataccacccaaccagggatctaaccaaaacatagtagaagtcgcatcacccacgt 7130123  T
Q  278 tccaactaatattatctctcagccactcaccatccacctgacccacgccctctctgatacttctcatagtctgccaccacacctacccatcacccctctc 377  Q
    ||  |||||| |||||||||| |||| || ||||||||||||||||||||| ||| |||||| |||||||||||| ||||||| ||||||||||||||||    
T  7130124 tctgactaatgttatctctcaaccacccaacatccacctgacccacgccctttcttatacttttcatagtctgccgccacaccgacccatcacccctctc 7130223  T
Q  378 aaca 381  Q
    ||||    
T  7130224 aaca 7130227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 76 - 371
Target Start/End: Complemental strand, 6820907 - 6820615
Alignment:
Q  76 ctcaccaacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcaccccccaccccataatgaacacattctctacatttgtca 175  Q
    |||||||||| ||||| |||||||||||||||| ||||| ||||||||| |||||||||||| ||||| |   || |||||| |||||||||| ||| ||    
T  6820907 ctcaccaactcttccttccaagcaaataacctcatacgctacttccactcctcaccgttcactccccatcatgtagtgaacatattctctacagttgcca 6820808  T
Q  176 attta-tatcagctaactcgtataatcttctataagtat--ctcagggacatatcatcc-aatcaggaatctaacaaaaacaaagtagaattcccatcac 271  Q
    ||||| | ||||||||||| ||||||||||||||| |||  |||| || || | ||||| || || | ||||||| |||||| |||||| ||||||||||    
T  6820807 atttattgtcagctaactcatataatcttctataactatccctcaagggcaaaccatccaaaccaaggatctaaccaaaacagagtagagttcccatcac 6820708  T
Q  272 acatcttccaactaatattatctctcagccactcaccatccacctgacccacgccctctctgatacttctcatagtctgccaccacacctacccatcacc 371  Q
     ||  ||| ||||||| ||||||||||       |||| || |||||||||| ||||||  ||||||||||||| | ||||| |||||| ||||||||||    
T  6820707 ccacgttctaactaatgttatctctca-------accacccgcctgacccacaccctcttagatacttctcataatatgccatcacaccaacccatcacc 6820615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 48352193 - 48352158
Alignment:
Q  88 tcctcccaagcaaataacctcctacgccacttccac 123  Q
    ||||||||||||||||||||||| ||||||||||||    
T  48352193 tcctcccaagcaaataacctcctccgccacttccac 48352158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 26955807 - 26955856
Alignment:
Q  87 ttcctcccaagcaaataacctcctacgccacttccacttctcaccgttca 136  Q
    ||||||||||||||| |||||| |||||||||| ||| ||||||| ||||    
T  26955807 ttcctcccaagcaaacaacctcttacgccactttcacgtctcaccattca 26955856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 393
Target Start/End: Complemental strand, 6818225 - 6818197
Alignment:
Q  365 catcacccctctcaacacacaaccgcccc 393  Q
    |||||||||||||||||||||||||||||    
T  6818225 catcacccctctcaacacacaaccgcccc 6818197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 227 - 383
Target Start/End: Complemental strand, 1072606 - 1072450
Alignment:
Q  227 catccaatcaggaatctaacaaaaacaaagtagaattcccatcacacatcttccaactaatattatctctcagccactcaccatccacctgacccacgcc 326  Q
    ||||||| |||  ||||||| ||||||||||| ||||| ||| || || ||||| |||||||||||||||||| ||| | |||||||| || || || ||    
T  1072606 catccaaccagagatctaaccaaaacaaagtaaaattctcattacccaccttccgactaatattatctctcagtcaccctccatccacgtgtcctactcc 1072507  T
Q  327 ctctctgatacttctcatagtctgccaccacacctacccatcacccctctcaacaca 383  Q
    |||||| ||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  1072506 ctctctaatatttctcatagtctgccaccataccgacccatcacccctctcaacaca 1072450  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 1072755 - 1072686
Alignment:
Q  81 caacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcaccccccaccccata 150  Q
    ||||| |||||||||| | | |||||||||||| ||||| |||  |||||| ||||| ||||||||||||    
T  1072755 caactcttcctcccaaacgagtaacctcctacgacacttgcacgcctcaccattcacaccccaccccata 1072686  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 358
Target Start/End: Original strand, 33178045 - 33178381
Alignment:
Q  22 atcaactgatccaacctgtaaaaccattggaattaaccgcccaacacagtctctctcaccaacttttcctcccaagcaaataacctcctacgccacttcc 121  Q
    |||| ||||||||||||||||||| | |||| |||  ||||| |||||  ||| |||||||||| |||||||||||| || ||||||  |||||||||||    
T  33178045 atcacctgatccaacctgtaaaacaactggagttagacgccctacaca--ctccctcaccaactcttcctcccaagcgaacaacctctgacgccacttcc 33178142  T
Q  122 acttctcaccgttcaccccccaccccataatgaacacattctctacatttgtcaatttatatcagctaactcgtataatcttctataagtatc--tcagg 219  Q
    ||  ||| || |||| |||||||||||||   |||| || | | ||| ||||||| ||||  ||| ||||||||| ||||||  | ||  |||  ||||     
T  33178143 acgcctctccattcagcccccaccccatagaaaacatatccaccacagttgtcaacttattgcagttaactcgtaaaatctttgaaaacaatccttcaga 33178242  T
Q  220 gacatatcatccaatcaggaatctaacaaaaacaaagtagaattcccatcacacatcttccaactaatattatctctcagccactcaccatccacctgac 319  Q
    | |||| ||||||| || | ||||| | |||||| |||||| || ||||| | || |||||  ||||||||||| || | |||| | |||||||| || |    
T  33178243 ggcataccatccaaccacggatctacccaaaacagagtagagtttccatcccccaccttccggctaatattatcccttaaccaccctccatccacttgtc 33178342  T
Q  320 ccacgccctctctgatacttctcatagtctgccaccaca 358  Q
    ||||  ||||||| ||| |||| ||| ||||||||||||    
T  33178343 ccacctcctctctaatatttcttatactctgccaccaca 33178381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 15038747 - 15038804
Alignment:
Q  86 tttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcacccccca 143  Q
    |||||||||||||||| ||| |||||| ||||||||||  |||||||||||| |||||    
T  15038747 tttcctcccaagcaaacaacgtcctacaccacttccacggctcaccgttcactcccca 15038804  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 16305297 - 16305411
Alignment:
Q  22 atcaactgatccaacctgtaaaaccattggaattaaccgcccaacacagtctctctcaccaacttttcctcccaagcaaataacctcctacgccacttcc 121  Q
    |||||||| ||||||||| ||||||| |  | ||| | ||| ||||||  ||| |||| ||||| |||||||||||| ||||||||||||| | ||||||    
T  16305297 atcaactgttccaacctgcaaaaccactcaagttagctgcctaacaca--ctccctcagcaactcttcctcccaagcgaataacctcctacacaacttcc 16305394  T
Q  122 acttctcaccgttcacc 138  Q
    ||  |||||| ||||||    
T  16305395 acacctcaccattcacc 16305411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 48710362 - 48710397
Alignment:
Q  88 tcctcccaagcaaataacctcctacgccacttccac 123  Q
    |||||||| |||||||||||||||||||||||||||    
T  48710362 tcctcccacgcaaataacctcctacgccacttccac 48710397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 13216975 - 13217011
Alignment:
Q  87 ttcctcccaagcaaataacctcctacgccacttccac 123  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  13216975 ttcctcccaagctaataacctcctactccacttccac 13217011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 27515880 - 27515915
Alignment:
Q  88 tcctcccaagcaaataacctcctacgccacttccac 123  Q
    |||||||| |||||||||||||||||||||||||||    
T  27515880 tcctcccacgcaaataacctcctacgccacttccac 27515915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 42918063 - 42918027
Alignment:
Q  87 ttcctcccaagcaaataacctcctacgccacttccac 123  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  42918063 ttcctcccaagcaaataacctcctccgccatttccac 42918027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 2845423 - 2845488
Alignment:
Q  78 caccaacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcacccccca 143  Q
    ||||||||| || || |||||||| || ||||| |||||||||| | ||||||||||||| |||||    
T  2845423 caccaacttctcatctcaagcaaacaatctccttcgccacttcctcgtctcaccgttcactcccca 2845488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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