View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15148_low_14 (Length: 392)

Name: NF15148_low_14
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15148_low_14
NF15148_low_14
[»] chr6 (3 HSPs)
chr6 (66-123)||(13561971-13562028)
chr6 (264-343)||(9928083-9928172)
chr6 (298-333)||(27439180-27439215)
[»] chr5 (3 HSPs)
chr5 (66-123)||(38603085-38603142)
chr5 (66-122)||(39051040-39051096)
chr5 (298-339)||(38473221-38473262)
[»] chr2 (2 HSPs)
chr2 (68-123)||(38593728-38593783)
chr2 (68-123)||(38597324-38597379)
[»] scaffold0003 (1 HSPs)
scaffold0003 (298-333)||(48147-48182)


Alignment Details
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 13561971 - 13562028
Alignment:
Q  66 aagagagaaatgaatgggttcggacagaatggacgagtttgaaacggtgggtcgcaaa 123  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  13561971 aagagagaaattaatggcttcggacagaatggacgggtttgaaacggtgggtcgcaaa 13562028  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 9928083 - 9928172
Alignment:
Q  264 atgaagaaattgatgatcatcatcatcatgttga----------tgttgatgatttctggatttaagaaattggaggtgtagtgatgaga 343  Q
    ||||||||||||||||| ||||||||||||||||          ||||||||||||||| |||| |||||||||||||||||||| ||||    
T  9928083 atgaagaaattgatgatgatcatcatcatgttgatgttgattgttgttgatgatttctgaattttagaaattggaggtgtagtgacgaga 9928172  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 333
Target Start/End: Complemental strand, 27439215 - 27439180
Alignment:
Q  298 tgttgatgatttctggatttaagaaattggaggtgt 333  Q
    |||||| |||||||||||||||||||||||||||||    
T  27439215 tgttgacgatttctggatttaagaaattggaggtgt 27439180  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 38603142 - 38603085
Alignment:
Q  66 aagagagaaatgaatgggttcggacagaatggacgagtttgaaacggtgggtcgcaaa 123  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||    
T  38603142 aagagagaaatcaatggcttcggacagaatggacgactttgaaacggtgggtcgcaaa 38603085  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 39051096 - 39051040
Alignment:
Q  66 aagagagaaatgaatgggttcggacagaatggacgagtttgaaacggtgggtcgcaa 122  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||    
T  39051096 aagagagaaatcaatggcttcggacagaatggacgggtttgaaacggtgggtcgcaa 39051040  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 38473221 - 38473262
Alignment:
Q  298 tgttgatgatttctggatttaagaaattggaggtgtagtgat 339  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  38473221 tgttgatgatttctggatttaaaaaattggaggtgtagtgat 38473262  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 38593728 - 38593783
Alignment:
Q  68 gagagaaatgaatgggttcggacagaatggacgagtttgaaacggtgggtcgcaaa 123  Q
    ||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||    
T  38593728 gagagaaatcaatagcttcggacagaatggacgggtttgaaacggtgggtcgcaaa 38593783  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 38597324 - 38597379
Alignment:
Q  68 gagagaaatgaatgggttcggacagaatggacgagtttgaaacggtgggtcgcaaa 123  Q
    ||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||    
T  38597324 gagagaaatcaatagcttcggacagaatggacgggtttgaaacggtgggtcgcaaa 38597379  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 333
Target Start/End: Original strand, 48147 - 48182
Alignment:
Q  298 tgttgatgatttctggatttaagaaattggaggtgt 333  Q
    |||||| |||||||||||||||||||||||||||||    
T  48147 tgttgacgatttctggatttaagaaattggaggtgt 48182  T

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