View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_low_15 (Length: 354)
Name: NF15148_low_15
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 28847234 - 28846896
Alignment:
| Q |
1 |
gataatctttctttaccaaaatggcaaaatagaggtaaaagaggaagaaaatgtattggtgttgttgaggctgctacaaatcttttacatcttatgtcta |
100 |
Q |
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| T |
28847234 |
gataatctttctttaccaaaatggcaaaatagaggtaaaagaggaagaaaatgtattggtgttgttgagggtgctacaaatcttttacatcttatgtcta |
28847135 |
T |
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| Q |
101 |
a---gtacttttgtactttgtcgattgatgagcaaaagagtcatgaatttccccttccgattaagaaaagatattgttctgttgacgagtcatcatcaaa |
197 |
Q |
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| T |
28847134 |
ataagtacttttgtactttgtcgattgatgagcaaaagagtcctgaatttccccttccgattaagaaaagatattgttctgttgacgagtcatcatcaaa |
28847035 |
T |
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| Q |
198 |
tgggaatggaaagaaggaacttattgtgaacaagaatagtttggttttgggtggttcattaaagattgaaaacaaatgtgatggtaatggtgatgagagt |
297 |
Q |
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| T |
28847034 |
tgggaatggaaagaaggaacttattgtgaacaagaatagtttcgttttgggttgttcattgaagattgaaaacaaatgtgatggtaatggtgatgagagt |
28846935 |
T |
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| Q |
298 |
gacaacaatgatgaagagaaaagtaatgatgccgctact |
336 |
Q |
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| T |
28846934 |
gacaacaatgatgaagagaaaagtaatgatgccgctact |
28846896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 43796656 - 43796732
Alignment:
| Q |
10 |
tctttaccaaaatggcaaaatagaggtaaaagaggaagaaaatgtattggtgttgttgaggctgctacaaatctttt |
86 |
Q |
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| T |
43796656 |
tctttgccaaaatggcagaagagagatagaagaggtagaaagtgtattggtagtgtcgaggcggctgcaaatctttt |
43796732 |
T |
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