View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_low_16 (Length: 348)
Name: NF15148_low_16
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 26327467 - 26327140
Alignment:
| Q |
18 |
cttcttaatttggttctacgagaaattttctttagagttgatgcagctatgttcattctagccgctgcttcttccataggtagatgaaaataatcgacga |
117 |
Q |
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| T |
26327467 |
cttcttaattttgttctacgagaaattttctttagagttgatgcagctatgttcattctagccgctgcttcttccataggtagatgaaaataatcgacga |
26327368 |
T |
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| Q |
118 |
aatcagccaatgtaaattgtgcacatcttttcctctgttacaaaatgttatatatcaatttaatcacgttgtatatactaccatgcagacaagtctgtcg |
217 |
Q |
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| T |
26327367 |
aatcagccaatgtaaattgtgcacatcttttcctctgttacaatatgttatatatcaatttaatcacgttg---atactaccatgcagataagtctgtcg |
26327271 |
T |
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| Q |
218 |
ctttttaatcgtactaacgtatgtaaattataaacaatatttatctcgcgagtatatattg-ttcaagaaaacaagaagagataaa-attacctactctg |
315 |
Q |
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| T |
26327270 |
cttttttatggtgctaacgtatgtaaattataaacaatatttacctcgcgcatatatattgtttcaagaaatca--aagagataaacattacctgctctg |
26327173 |
T |
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| Q |
316 |
aaaggttccttttttcaggtgttccaatctcac |
348 |
Q |
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| T |
26327172 |
agaggttccttttttcaggtgtttcaatctcac |
26327140 |
T |
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