View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_low_18 (Length: 341)
Name: NF15148_low_18
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 197 - 323
Target Start/End: Complemental strand, 38539072 - 38538946
Alignment:
| Q |
197 |
gacttttgatcttatcataactaacatgtatttagnnnnnnnngataatcattttatcacatacaagagtgtggtgacatgtcctcaaatattgtttttt |
296 |
Q |
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| T |
38539072 |
gacttttgatcttatcataactaacatgtatttaaaaaaaaaagataatcattttatcaaatacaagagtgtggtgacatatcctcaaatatattttttt |
38538973 |
T |
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| Q |
297 |
ctcattagaaaattggacagaaagatt |
323 |
Q |
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| T |
38538972 |
ctcattagaaaattggacagaaagatt |
38538946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 38539324 - 38539212
Alignment:
| Q |
1 |
aaaactgttgagaaactaaaaatttaataaaaccnnnnnnn--aaaggatctaataaaacttttagtaagactaaaacaaaaaatttctaaatgggcatg |
98 |
Q |
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|||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||| |
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| T |
38539324 |
aaaactgttgaggaactaaaaatctaataaaacctttttttttaaaggatctaataaaacttttagaaagattaaaacaaaaaatttataaataggcatg |
38539225 |
T |
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| Q |
99 |
tagagagtgtata |
111 |
Q |
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| T |
38539224 |
cagagagtgtata |
38539212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 38539214 - 38539173
Alignment:
| Q |
132 |
ataaacaggggatattcccccaaagaggtgaatacaaagagt |
173 |
Q |
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| T |
38539214 |
ataaacaggggatattcccccaaagaggtgaatacaaagagt |
38539173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 289
Target Start/End: Complemental strand, 38539178 - 38539150
Alignment:
| Q |
261 |
aagagtgtggtgacatgtcctcaaatatt |
289 |
Q |
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| T |
38539178 |
aagagtgtggtgacatgtcctcaaatatt |
38539150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 35671782 - 35671714
Alignment:
| Q |
247 |
attttatcacatacaagagtgtggtgacatgtcctcaaatattgttttttctcattagaaaattggaca |
315 |
Q |
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| T |
35671782 |
attttatcacatacaaaagtggggtgacatgttctcatataaatttatttcttatttgaaaattggaca |
35671714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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