View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_low_2 (Length: 978)
Name: NF15148_low_2
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-173; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 326 - 671
Target Start/End: Complemental strand, 2701530 - 2701190
Alignment:
| Q |
326 |
ttggtttcctaaaatccaacaaattttgtttggagatctaaattttagaaaggttaagatttgactgtagaatttggtaaatacaattgttgtggagact |
425 |
Q |
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| T |
2701530 |
ttggtttcctaaaatccaacaaattttgtttggagatctaaattttagaaaggttaagatttgactgtagaatttggtaaatacaattgttgtggagact |
2701431 |
T |
|
| Q |
426 |
gaagatggattttgtaatataattattgtaaattatacaaatgcttctcattcaaaatatatcttaattcaaaatatgtaagaaactatgtaaattatac |
525 |
Q |
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| T |
2701430 |
gaagatggattttgtaatat---tattgtaaattatacaaatgcttgtcattcaaaatatatcttaattcaaaatatgtaagaaactatgtaaattatac |
2701334 |
T |
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| Q |
526 |
taagaaagaattattggtacggttcaattcaatcccattttttgtttccaatttctgtgcaaaacatgcctaaccctaaatctatcatggctagagttca |
625 |
Q |
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| T |
2701333 |
taagaaagaattattggtacggttcaattcaatcccattttttgtttccaatttctatgcaaaacatgcctaaccctaaatctatcattgctagagttca |
2701234 |
T |
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| Q |
626 |
aggtattttcaaataatataagttggcgtaaaagaataataattat |
671 |
Q |
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| T |
2701233 |
aggtattttcaaata--ataagttggcgtaaaagaataataattat |
2701190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 2701876 - 2701574
Alignment:
| Q |
16 |
cacttttctctacacatattgaaatcaaatcatccagcaaagaacttgtagaaatgcataatatccctccaacaattttgcaatccaatcatgtaagtgt |
115 |
Q |
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| T |
2701876 |
cacttttctctacacatattgaaatcaaatcatccagcaaagaacttgtggaaatgcataatatccctccaacaattttgcaatccaatcatgtaagtgc |
2701777 |
T |
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| Q |
116 |
tgtgtataataggactttcttgaagttttttgaaattagtaatttaaggtaatgtttcatcttattattgcagggggtgaacaaaggagaagaagatgaa |
215 |
Q |
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| T |
2701776 |
tgtgtataataggactttcttgaatttttttgaaattagtattttaaggtaatgtttcatcttattattgcagggggtgaacaaaggagaagaagatgaa |
2701677 |
T |
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| Q |
216 |
aattttacctcactttcaatgttaatgaagaatgtacaaggctgctaataattaaagatgatatatgtttttagtcatgttatatggtcattagaaaaat |
315 |
Q |
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| T |
2701676 |
aattttacctcactttcaatgttaatgaagaatgtaaaaggctgctaataattaaagatgatatatgtgtttagtcatgttatatggtcattagaaaaat |
2701577 |
T |
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| Q |
316 |
gac |
318 |
Q |
| |
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||| |
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| T |
2701576 |
gac |
2701574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 2700609 - 2700495
Alignment:
| Q |
165 |
taatgtttcatcttattattgcagggggtgaacaaaggagaagaagatgaaaattttacctcactttcaatgttaatgaagaatgtacaaggctgctaat |
264 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700609 |
taatgtttcatgttattattgcagggggtgagcaaaggagaagaagatgaaaattttacctcactttcaatgttaatgaagaatgtacaaggctgctaat |
2700510 |
T |
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| Q |
265 |
aattaaagatgatat |
279 |
Q |
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| T |
2700509 |
aattaaagatgatat |
2700495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 655 - 807
Target Start/End: Complemental strand, 2701178 - 2701026
Alignment:
| Q |
655 |
aaaagaataataattataataatagcaaagtcggtatnnnnnnnnn--ttaataatagcaaagttttaaacatttggccaagaaatgtgccacctgtaac |
752 |
Q |
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| T |
2701178 |
aaaagaataataattataataatagcaaagtcggtataaaaaaaaaaattaataatagcaaagttttaaatatttggccaagaaatgtgccacacgtaag |
2701079 |
T |
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| Q |
753 |
acataaatttatcaaaaaggaaattcattgatttcacaagattattggttaaaat |
807 |
Q |
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| T |
2701078 |
acataaatttatcaaaaagg--attcattgatttcacaagattattggttaaaat |
2701026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 278 - 432
Target Start/End: Complemental strand, 2700437 - 2700282
Alignment:
| Q |
278 |
atatgtttttagtcatgttatatggtcattagaaaaatgacnnnnnnn-ttggtttcctaaaatccaacaaattttgtttggagatctaaattttagaaa |
376 |
Q |
| |
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|||||| || ||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||| || | ||||||||||||||||||||| |
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| T |
2700437 |
atatgtgttcagttatgttatatggtcactagaaaaatgacaaaattaattggtttcctaaaatctaacaaatattttctggagatctaaattttagaaa |
2700338 |
T |
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| Q |
377 |
ggttaagatttgactgtagaatttggtaaatacaattgttgtggagactgaagatg |
432 |
Q |
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| T |
2700337 |
gcttaagatttgaccgtaaaatttggtaaatacaattgttgtggagactgaagatg |
2700282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 2700958 - 2700846
Alignment:
| Q |
16 |
cacttttctctacacatattgaaatcaaatcatccagcaaagaacttgtagaaat--gcataatatccctccaacaattttgc---aatccaatcatgta |
110 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||| || ||||| ||| |||||||||||||||||||||| |||||||||||||| |
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| T |
2700958 |
cacttttttctacacatattgaaatcaaatcatcaagcaaagaacacgtggaaatgcgcacaatatccctccaacaattttgcaataatccaatcatgta |
2700859 |
T |
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| Q |
111 |
agtgttgtgtata |
123 |
Q |
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|| |||||||||| |
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| T |
2700858 |
agagttgtgtata |
2700846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 2699068 - 2698994
Alignment:
| Q |
435 |
ttttgtaatataattattgtaaattatacaaatgcttctcattcaaaatatatcttaattcaaaatatgtaagaa |
509 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||| |
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| T |
2699068 |
ttttctaatataactattgtaaattatacaaatgcttgtcatgcaaaatatgtcttaattcaaaatatataagaa |
2698994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 702 - 738
Target Start/End: Complemental strand, 2698852 - 2698816
Alignment:
| Q |
702 |
taataatagcaaagttttaaacatttggccaagaaat |
738 |
Q |
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| T |
2698852 |
taataataggaaagttttaaacatttggccaagaaat |
2698816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 643
Target Start/End: Complemental strand, 2698956 - 2698878
Alignment:
| Q |
564 |
tttttgtttccaatttctgtgcaaaacatgcctaaccctaaatctatcatggctagagttcaaggtattttcaaataata |
643 |
Q |
| |
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| T |
2698956 |
tttttctttccaatttctatgcaaaacatgcctgactctaaa-ctaacattgctagagtgcaacctattttcaagtaata |
2698878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 2700771 - 2700730
Alignment:
| Q |
131 |
tttcttgaagttttttgaaattagtaatttaaggtaatgttt |
172 |
Q |
| |
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|||||||||||||||||||||| ||| | ||||||||||||| |
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| T |
2700771 |
tttcttgaagttttttgaaattggtattctaaggtaatgttt |
2700730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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