View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15148_low_21 (Length: 312)

Name: NF15148_low_21
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15148_low_21
NF15148_low_21
[»] chr5 (1 HSPs)
chr5 (4-296)||(10421128-10421423)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 296
Target Start/End: Original strand, 10421128 - 10421423
Alignment:
Q  4 attctgaatatcatcagttagtttaagtgggtggcagcctcattaatgtaaaggctcaacttacaccatctaaactactctatacattgttgtaatctct 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10421128 attctgaatatcatcagttagtttaagtgggtggcagcctcattaatgtaaaggctcaacttacaccatctaaactactctatacattgttgtaatctct 10421227  T
Q  104 aacatatgaatatccagatgacaagtaattcatctttttct--ttactagnnnnnnnctttctcttataatttgggtgggatt-gatagataataaaata 200  Q
    |||||||| |||||||||||||||||||||||||||| |||  |||||||       |||||||||||||||||||||||||| | ||||||||||||||    
T  10421228 aacatatgcatatccagatgacaagtaattcatctttctctctttactagtttttttctttctcttataatttgggtgggatttgttagataataaaata 10421327  T
Q  201 ttgagtttaagctattagttcttggaaatctatgttatgcagtgctattgtaatattattgatattttgtgaacccttaaccgtctttgttagtat 296  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10421328 ttgagtttaaactattagttctttgaaatctatgttatgcagtgctattgtaatattattgatattttatgaacccttaaccgtctttgttagtat 10421423  T

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