View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_low_23 (Length: 290)
Name: NF15148_low_23
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 7056303 - 7056090
Alignment:
| Q |
19 |
tttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgactga |
118 |
Q |
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| T |
7056303 |
tttacttgcctcatgaaagtactcgagatctcctaaacacaactcatttctggaatctacatcaatatactctcctttacaacttctctgcagtgactga |
7056204 |
T |
|
| Q |
119 |
aaagatatagttgtagaccattaaacataataacatcattcattaaattcaagtacaaacacatcatcattgtaatcaacaacaaaatacaatccatgtt |
218 |
Q |
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| ||||||||| ||||| |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7056203 |
atagatatagtagtagatcattaagcataatagcatcattcattaaattcaagtagaaacacatcatcattgtaatcaacaagaaaatacaatccatgtt |
7056104 |
T |
|
| Q |
219 |
gtttgattaaacag |
232 |
Q |
| |
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|||||||||||||| |
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| T |
7056103 |
gtttgattaaacag |
7056090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 7027754 - 7027540
Alignment:
| Q |
19 |
tttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgactga |
118 |
Q |
| |
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|||||||||||||| |||| || ||| |||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||| |||| ||||||| |
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| T |
7027754 |
tttacttgcctcatcaaaggaccggagatctcttaaacacaactcatttctgtaatctacatcaatgtactctcctttacaatttctttgcaatgactga |
7027655 |
T |
|
| Q |
119 |
aaagatatagttgtagaccattaaacataataacatcattcattaaattcaagtacaaacacatcatcattgtaatcaacaacaaaatacaatccatgtt |
218 |
Q |
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||||||| | | |||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
7027654 |
aaagataaaatggtagaccattaagcataataacatcatccattaaattcaagtacaaacatatcatcattgtaatcaacaagaaaatacaatccatgtt |
7027555 |
T |
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| Q |
219 |
gtttgattaaacagg |
233 |
Q |
| |
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||||||||||||||| |
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| T |
7027554 |
gtttgattaaacagg |
7027540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 7014333 - 7014135
Alignment:
| Q |
19 |
tttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgactga |
118 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
7014333 |
tttacttgcctcatgaaagtactggagatctcttaaacacaactcatttccggaatctacatcaatatactctcctttacaatttctctgcagtgactga |
7014234 |
T |
|
| Q |
119 |
aaagatatagttgtagaccattaaacataataacatcattcattaaattcaagtacaaacacatcatcattgtaatcaacaacaaaatacaatccatgt |
217 |
Q |
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||| ||||| | |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
7014233 |
aaatatataatggtagaccattaagcataataacatcaaaatttaaattcaagttcaaacacatcatcattgtaatcaacaggaaaatacaatgcatgt |
7014135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 7047465 - 7047286
Alignment:
| Q |
19 |
tttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgactga |
118 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
7047465 |
tttacttgcctcatgaaagtactggagatctcttaaacacaactcatttccggaatctacatcaatatactctcctttacaatttctctgcagtgactga |
7047366 |
T |
|
| Q |
119 |
aaagatatagttgtagaccattaaacataataacatcattcattaaattcaagtacaaacacatcatcattgtaatcaac |
198 |
Q |
| |
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||||||||| | ||||||||||| ||||||||||||| || |||||||||||| |||||||||||| |||||||||||| |
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|
| T |
7047365 |
aaagatataatgatagaccattaagcataataacatcactctttaaattcaagttcaaacacatcattattgtaatcaac |
7047286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 7004686 - 7004523
Alignment:
| Q |
19 |
tttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgactga |
118 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
7004686 |
tttacttgcctcatgaaagtactggagatctcttaaacacaactcatttccggaatctacatcaatatactctcctttacaatttctctgcagtgactga |
7004587 |
T |
|
| Q |
119 |
aaagatatagttgtagaccattaaacataataacatcattcattaaattcaagtacaaacacat |
182 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||||||| || |||||||||||| ||||||||| |
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| T |
7004586 |
aaagatataatgatagaccattaagcataataacatcactctttaaattcaagttcaaacacat |
7004523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 7040021 - 7039855
Alignment:
| Q |
19 |
tttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgactga |
118 |
Q |
| |
|
|||||||||||||| |||| ||| ||| |||| ||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||||| |
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| T |
7040021 |
tttacttgcctcatcaaaggactggagatctcttaaacacaactcatttctggaatctacattaatgtactctcctttacaatttctctgcagtgactga |
7039922 |
T |
|
| Q |
119 |
aaagatatagttgtagaccattaaacataataacatcattcattaaattcaagtacaaacacatcat |
185 |
Q |
| |
|
||||||||| | |||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
7039921 |
aaagatataatggtagacgattaagcataataacatcatccattaaattcaagtacaaaaacatcat |
7039855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 6994788 - 6994718
Alignment:
| Q |
47 |
tctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgactg |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| |
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|
| T |
6994788 |
tctcttaaacacaactcatttctggaatctacatcaacatactctcctttacaatttctctgcagtgactg |
6994718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 7020745 - 7020647
Alignment:
| Q |
19 |
tttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgactg |
117 |
Q |
| |
|
|||||||||||||| |||| || ||| ||| | |||||||||||||| |||||||||| | ||||||||||||||||||| |||||||||||||||| |
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|
| T |
7020745 |
tttacttgcctcatcaaaggaccggagatcttttgaacacaactcatttttggaatctacatgaatatactctcctttacaatttctctgcagtgactg |
7020647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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